Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSQDEQVRAWLER---------ELDGTVVAFERQE---------RWRAAWFAELK---------NQGELRSYYVRGHRGGNFREMITLGQEADINRVLHRHGVPVPRVHGMIDDPP-----------AIVMDRLPGRVNLATALDDAEREAVLDQYVDAMC--RMHAID----------VNEFGALGLPVPADNRAAALNMYATGERN---------------------YRRAKTAPSPMIEFMWRWLCRNVPAGRTQQGLIQADAAQFLFEQGRMTGLIDFEAAYIGDPIAEFAAMRS-RDCEEPLGDIGRIARRYEAVTG----EPVDRDAVEFHTAGWSLMTPFQWEDSVRNPAPGDSWLEYFTWLVGCGRWALEAIAAVAGAPLPTVEAPAQRPSSYSSAAYTNLMSLLDEWPTASAYEGFRADSARAVTRFAEHVHAFG--ADLEGAAVEEISELLGTRQPD----LATAEAALEQFVLRASPDLDVALVQYFHRW--TQRQQFLIAGTGARHEKLIHLSLQPLTADAWQAEGQSRRHA----------------------------
4YPL Chain:C ((5-542))LSDLEALRKKIEEVGMPEAVKTKALKELDRLERMQQGSPEATVARTYLDWLTEVPWSKADPEVLDINHTRQVLDEDHYG-LKDVKERILEYLAVRQLTQGLDVRNKAPILVLVGPPGVGKTSLGRSIARSMNRKFHRISLGGVRDEAEIRGHRRTYIGAMPGKLIHAMKQVGVINPVILLDQIDKMSSDWRGDPASAMLEVLDPEQNNTFTDHYLDVPYDLSKVFFITTANTLQTIPRPLLDRMEVIEIPGYTNMEKQAIARQYLWPKQVRESG-MEGRIEVTDAAILRVISEYTREAGVRGLERELGKIARKGAKFWLEGAWEGLRTIDASDIPTYLG----IPRYRPDKAETEPQVGTAQGLAWTPV---------------GGTLLTIEVAAVPGSGKLSL-------------TGQLGEVMKESAQAALTYLRAHTQDYGLPEDFYNKVDLHVHVPDGATPKDGPSAGITMATAIASALSRRPARMDIAMTGEVSLRGKVMPIGGVKEKLLAAHQAGIHKIVLPKDNEAQLEELPKEVLEGLEIKLVEDVGEVLEYLLLPEPTMPPVV


General information:
TITO was launched using:
RESULT:

Template: 4YPL.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1745 40059 22.96 94.03
target 2D structure prediction score : 0.47
Monomeric hydrophicity matching model chain C : 0.61

3D Compatibility (PKB) : 22.96
2D Compatibility (Sec. Struct. Predict.) : 0.47
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.125

(partial model without unconserved sides chains):
PDB file : Tito_4YPL.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4ypl-query.scw
PDB file : Tito_Scwrl_4YPL.pdb: