Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMHPAKWRETIDPFELDYHHFRLTEILGYPHAGNDVFHAKGIYQQQE--TEVYIKVARQQGA-DIKREIDTILKLNLELAPEIIDY-DQ--NREQFVVTIARQGERL-SMLLNQNKDEKSIDYLFEYGQTLAILHQTQGNFENVKDR---RFFHIPLE--EHFR-------EL---RLEEVYHYLVKHKPERETRCFCHGDFHYANILWKEKHISAILDFELSGMGNREFDIAWALIVRPGQRFLLTEEEIREFLRGYASEGTFQEDLVRYYMVLIYSFFYKMGETEYQDFVRSFLQQNIR
4GKI Chain:C ((38-269))-------------------------------GATIYRLY----GKPNAPELFLKHGKGSVANDVTDEMVRLNWLTA-FMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEE--YPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERNGWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLG----EFSPSLQKRLFQKYGIDN-PDMNKLQFHLMLD-------------------------


General information:
TITO was launched using:
RESULT:

Template: 4GKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 853 8333 9.77 39.68
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain C : 0.64

3D Compatibility (PKB) : 9.77
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.342

(partial model without unconserved sides chains):
PDB file : Tito_4GKI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4gki-query.scw
PDB file : Tito_Scwrl_4GKI.pdb: