Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMINDMKISLPQSLKSFIGNQPLQKDKVGQSPSDVYSFTKNNEKYYLKTTELIYAQTTYSIIREAKILDWLDGKLNVPELVLMDT-DHENEYMISKAVPAKPLQDFTG-KSDQFFIDIYTDALAQLQSISIKNCPFISNKKFRLAEAEFFIENGLLDELDDDEKDLKLWSSYQNFAEFLDDLKQQNFQEEYVFSHGDLTDSNVFLSHDAQIYFLDVGRAGIADRFVDIAFIERSLREDCSEDAALQ-FLNHLA-EDDSFKRNYFLKLDELN
2BKK Chain:A ((3-263))-----KMRISPELKKLIEKYRSVKDTEGMSPAKVYKLVGENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERHDGWSNLLMSEADGVLCSEEYEDEQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNN-------------------KDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSGRADKWYDIAFCVRSIREDIGEEQYVELFFDLLGIKPDWEKIKYYILLDEL-


General information:
TITO was launched using:
RESULT:

Template: 2BKK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1092 21171 19.39 87.85
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : 19.39
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.439

(partial model without unconserved sides chains):
PDB file : Tito_2BKK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2bkk-query.scw
PDB file : Tito_Scwrl_2BKK.pdb: