Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMINDMKISLPQSLKSFIGNQPLQKDKVGQSPSDVYSFTKNN--EKYYLKTTELIYAQTTYSIIREAKILDWLDGKLNVPELVLMDTDHENEYMISKAVPAKPLQDFTGKS---DQFFIDIYTDALAQLQSISIKNCPFISNKKFRLAEAEFFIENGLLDELDDDEKDLKLWSSYQNFAEFLDDLKQQNFQE-EYVFSHGDLTDSNVFLSHDAQIYFLDVGRAGIADRFVDIAFIERSLREDCSEDAALQFLNHLAE--DDSFKRNYFLKLDELN
4GKI Chain:C ((13-271))-----RPRLNSNLDADLYGYRWARDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTPDDAWLLTTAIPGKTAFQVLEEYPDSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDER-NGWP----VEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVGIADRYQDLAILWNCLGE-FSPSLQKRLFQKYGIDNPDMNKLQFHLMLDEF-


General information:
TITO was launched using:
RESULT:

Template: 4GKI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1050 27215 25.92 108.42
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain C : 0.75

3D Compatibility (PKB) : 25.92
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.75
QMean score : 0.484

(partial model without unconserved sides chains):
PDB file : Tito_4GKI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4gki-query.scw
PDB file : Tito_Scwrl_4GKI.pdb: