Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKIYEKYRDLITNPFDIK-YKNIEIKEIISYPPAGNDVVECLCKIGKDARNVFIKIERSKV--CDFATEIKNLNYLKNNSYYSKIPNIYESGIY---NNKQYIVLSKIEGERLSDIL-IKNDN-LRKELLYKYGQELAIIHRIPISNQKIAKQRAINS------YPNKTMYTTLS-KENNIKEYIKFL----EDNDFKKELTTFIHGDFHYANVLWLN--NDINGVIDWEYSGIGLREQDIAWACTLRPGQKFMDTMEDIQTFLKGYSEKEKFD--I--EKLRWCLINSYCHFYLMNENNEDYKNKLLILLRNCMEEKI
3N4U Chain:A ((5-279))---TFDQVEKAIEQLYPDFTIN--TIEI-----SGEGNDCIAYEI----NRDFIFKFPKHSRGSTNLFNEVNILKRIHNK-LPLPIPEVVFTGMPSETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKK-LLSRELKGPQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLME----DDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSFEKIIYG-------------------------


General information:
TITO was launched using:
RESULT:

Template: 3N4U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1062 34836 32.80 139.34
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 32.80
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.347

(partial model without unconserved sides chains):
PDB file : Tito_3N4U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3n4u-query.scw
PDB file : Tito_Scwrl_3N4U.pdb: