Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSSYEFN-VTQLRDLPFGDKNIKIITEKKGGWDSRFFILDGKVAVKVPRNITVQHSIIKEKIVTDLLRKELPLPIPDMNLAEIDSIDGNKIIIVIYEMLPGIELQNIHII---GENKIKTSKSLGLFLQKLHNI-----PDELAQILRSGISNVNNERNETDLELLNSVLEYFEEMRNKTNVSSYIEIMRTSMGSLKQMGTKIVPC--HGDFMSNNILYNEIEGKISGIIDWGDFSFRNPIYDFAGL---TYEFGEEFLDSMLAAYASNTSPDFREKIVKLSRFVPFITVYFSRHMKKKIRFEKKYIKIELLESGRNQILHVR
4DT9 Chain:A ((1-296))MRTYTFDQVEKAIEQLYPDFTINTIEISGEGNDCIAYEINRDFIFKFPKHSRGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPS-ETYQMSFAGFTKIKGVPLTPLLLNNLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKI----NEDNKKIKKLLSRELK-GPQMKKVDDF--YRDILEN------EIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDNDFISLMEDDEEYGMEFVSKILNHYKHKDIPTVLEKYRMKEKYWSF----------EKIIYGKEYGYMDWYEEGLNEIR---


General information:
TITO was launched using:
RESULT:

Template: 4DT9.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1258 50011 39.75 177.34
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : 39.75
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.335

(partial model without unconserved sides chains):
PDB file : Tito_4DT9.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4dt9-query.scw
PDB file : Tito_Scwrl_4DT9.pdb: