Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MSKSSSKIGGEYGEVRATIDVNKLNAYLKDKVPRVKAPVDVKQFKFGQSNPTYFLTDASNTRWVLRKKPAGQLLSTTAHQIEREYTILNAIHRHNVKSSTPSEQNVPVPEPIILCEDKEIIGTPF----YIMEFLDGRIFTNPRMPEIPENDRRECWLSAVRALAALSSLVPQELGLSNFAPMTPYFPRQIKSLSRVSQVQSEAADVETGIPTGKIPKFDEMIAWYRSHLP-DESKTGSRIVHGDYKIDNMIFHPTENRVIGILDWELCTLGSPLADLANLTQPWSVDPSQIPEEYRVSLLRGFKNQTDDIPIDLETLEREYCRLTHQPYPITEMVFARSWMLFRLSVISQGIAARYARRQASSEQAFLHVKLFPIVGELAIRVLEDAGHVLELKSKL 5IGH Chain:A ((5-259)) ----------------TTADTSQLYALAARH-G-LKLHGPLTVNELGLDYRIVIATVDDGRRWVLRIPRRAE----VSAKVEPEARVLAMLKNR---------LPFAVPDWRVANAEL--VAYPMLEDSTAMVIQPGSSTPDWV----VPQDSEVFAESFATALAALHAVPISAAVDAGMLI--RTPTQARQKVADDVDRVRR----EF---VVNDKRLHRWQRWLDDDSSWPDF---SVVVHGDLYVGHVLIDNT-ERVSGMIDWSEARVDDPAIDMAAHLMVFGE----E---------------------GLAKLLLTYEAAGGRVW--------------------------------------------------------------------

General information: TITO was launched using: RESULT: Template: 5IGH.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1003 -63680 -63.49 -254.72 target 2D structure prediction score : 0.65 Monomeric hydrophicity matching model chain A : 0.61 3D Compatibility (PKB) : -63.49 2D Compatibility (Sec. Struct. Predict.) : 0.65 1D Compatibility (Hydrophobicity) : 0.61 QMean score : 0.261

(partial model without unconserved sides chains): PDB file : Tito_5IGH.pdb: (Unconserved sides chains are recalculated) : Sequence: align-5igh-query.scw PDB file : Tito_Scwrl_5IGH.pdb: