Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence --MHPAKWRETIDPFELDYHHFRLTEILGYPHAGNDVFHAKGIYQQQETEVYIKVARQQGADIKREID-TILKLNLELAPEIIDYDQNREQFVVTIARQGERLSMLLNQ----NKDEKSIDYLFEYGQTLAI-LHQTQG---NFENVKDRRFFHIPLEEHFRELR---------LEEVYHYLVKHKPERETRCFCHGDFHYANILWKEKHISAILDFELSGMGNREFDIAWALIVR-PGQRFLLTEEEIREFLRGYASEGTFQEDLVRYYMVLIYSFFYKMGETEYQDFVRSFLQQNIR-------------------------- 2PPQ Chain:A ((5-320)) TDITEDELRNFLTQYDVG----SLTSYKGIAENSNFLLHTT------KDPLILTLYEKKNDLPFFLGLMQHLAAKGLSCPLPLPRKDGELLGEL-----SGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADEVEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFACNDLLAYDVSICLNAWCFEKDGAYNVTKGKALLEGYQSVRPLSEAELEALPLLSRGSALRFFLTRLYDWLTTPAGALVVKKDPLEYLRKLRFHRTIANVAEYGLA

General information: TITO was launched using: RESULT: Template: 2PPQ.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1203 11520 9.58 43.80 target 2D structure prediction score : 0.50 Monomeric hydrophicity matching model chain A : 0.65 3D Compatibility (PKB) : 9.58 2D Compatibility (Sec. Struct. Predict.) : 0.50 1D Compatibility (Hydrophobicity) : 0.65 QMean score : 0.339

(partial model without unconserved sides chains): PDB file : Tito_2PPQ.pdb: (Unconserved sides chains are recalculated) : Sequence: align-2ppq-query.scw PDB file : Tito_Scwrl_2PPQ.pdb: