Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAAPL---RIQSDWAQALRKD---EGEAWLSCHPPGKPSLYGSLTCQGIGLDGIPEVTASEGFTVNEINKKSIHISCPKENASSKFLAPYTTFSRIHTKSITCLDISSRG-GLGVSSSTDGTMKIWQASNGELRRVLEGHVFDVNCCRFFPSGLVVLSGGMDAQLKIWSAEDASCVVTFKGHKGGILDTAIVDRGRNVVSASRDGTARLWDCGRSACLGVLA---DCGSSINGVAVGAADNSINLGSPEQMPSEREVGTEAKMLLLAREDKKLQCLGLQSRQLVFLFIGSDAFNCCTFL----SGFLLLAGTQDGNIYQLDVRSPRAPVQVIH-RSGAPVLSLLSVRDGFIASQGDGSCFIVQQDLDYVTELTG----------ADCDPVYKVATWEK-----QIYTCCRDGLVRRYQLSDL
3ACP Chain:A ((1-417))MTKTITVAHIQYDFKAVLEENDENDDEFYINVDKNLNEIKEHKIVVLGNS----RGVDAGKGNTFEKVGSHLYKARLDGHDFLFNTI-IRDGSKMLKRADYTAVDTAKLQMRRFILGTTEGDIKVLDSNFNLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKENPHDGVNSIALFVGTDRQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLPSKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLRSPECPVGEFLINEGTPINNVYFAAGALFVSSGFDTSIKLDIISDPESERPAIEFETPTFLVSNDDEVSQFCYVSDDESNGEVLEVGKNNFCALYNLSNP


General information:
TITO was launched using:
RESULT:

Template: 3ACP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2213 70464 31.84 182.08
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : 31.84
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.411

(partial model without unconserved sides chains):
PDB file : Tito_3ACP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3acp-query.scw
PDB file : Tito_Scwrl_3ACP.pdb: