Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence------------------------------------------------------------------------------------------------------------------------------------PQPSDGLRRTWEEARENDCEVRIFSDKVNKYIQPLDRFFITPGLETHYIINAGGVQYP-----VSFLAPKGCEAAITGK-LPPTYGV-----------
1VZW Chain:A ((2-240))SKLELLPAVDVRDGQAVRETSYGSPLEAALAWQRSGAEWLHLVDLDAAFGTGDNRALIAEVAQAMDIKVELSGGIRDDDTLAAALATGCTRVNLGTAALETPEWVAKVIAEHGDKIAVGLDVRGTTLRGRGWTRDGGDLYETLDRLNKEGCARYVVTD-IGPNLELLKNVC---AATDRPVVASGGVSSLDDLRAIAGLVPAGVEGAIVGKAL--YAKAFTLEEALEATS


General information:
TITO was launched using:
RESULT:

Template: 1VZW.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 317 9852 31.08 131.35
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.59

3D Compatibility (PKB) : 31.08
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.59
QMean score : 0.333

(partial model without unconserved sides chains):
PDB file : Tito_1VZW.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1vzw-query.scw
PDB file : Tito_Scwrl_1VZW.pdb: