@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VT22: (2017-12-11 )
MLWFASRHPQMPWLPKIIAVVAVAYAFSPIDLIPDFIPILGFIDDAVILPILIWLAVRFTPQQVIFDAEQQAKEWLDEHEKRPKNYLVAVLIILIWLTLAVMAYFYFGGGL
Atome Classification :
(19 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......10.-........20........30....--....40--........50..------......60.......-.70........---------80..---......90........100.......110------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLW-FASRHPQ-M-P
W
L
P
K
I
I
A
V
V
A
V
A
Y
AF
S
P
I
D
L
I
P
D
--
F
I
P
I
L
G
--FID
D
A
V
I
L
P
I
L
I
------
W
L
A
VRF
T
P
Q
Q
VIFD
A
-
E
Q
Q
A
K
E
W
L
D
E
H
---------EKR
P
---
K
N
Y
L
V
A
V
L
I
I
L
I
W
L
T
L
A
V
M
A
Y
F
Y
FGGGL-------------------------------------------------------------------------------------------------------------------------------
22
Fugue
69.64
20%
-59
* C4 *
-
5FNO
3
MNLOX_MAGO7
A:
[38-605]
V
V
Y
T
L
PCEDGNS
T
A
R
T
A
E
I
R
L
K
Q
A
T
LLYGPSLLGNASY
F
P
G
G
P
L
G
D
A
I
S
L
R
D
Q
T
V
W
E
G
A
A
V
V
Q
S
L
R
A
F
T
D
A
A
K
V
A
A
N
I
K
Q
N
GGLNSLDDFKVLYQDGWKGSVPQGIARGQSENYTS
D
L
L
F
S
M
E
R
L
SVNPYI
L
K
R
L
H
PTEDALPFQVD
R
A
T
V
K
Q
L
TKTS
L
K
A
L
H
A
A
GR
L
F
V
A
D
HSYQRNYTRLAN
R
Y
S
A
A
C
T
A
L
F
Y
LDPRSNQFLPL
A
I
K
TNVGAD
L
T
Y
T
PLDTDNN
N
W
L
L
A
K
I
M
F
N
N
N
D
L
F
H
G
Q
I
F
H
V
A
Y
PH
A
I
A
E
I
V
H
L
A
A
L
R
T
MSARH
P
V
L
A
L
M
E
R
L
M
YQAYAV
R
P
L
G
E
R
VLFNKGG
L
F
E
Q
N
FAYP
Q
D
M
V
Y
K
F
-
V
G
D
S
Y
P
T
-
T
G
R
W
R
A
G
Y
L
D
T
D
V
R
A
R
G
L
V
D
A
D
Y
G
P
E
--
L
-
P
H
F
P
--
F
Y
E
D
G
S
R
L
V
E
V
I
R
R
F
V
R
S
F
V
D
A
T
Y
H
E
S
D
E
M
V
A
K
-
D
A
E
L
Q
A
W
V
A
E
A
N
G
PAGVEDF
E
P
G
P
LDT
R
E
R
L
V
E
V
L
T
H
M
A
W
L
T
G
C
A
H
H
V
L
N
Q
G
E
P
V
TASGVLPMHPTALYAPVPTSKANTTADLLGYLPS
A
Q
K
S
V
D
Q
V
T
L
L
A
R
F
NRPDVVPTNQTLRYMFAA
P
Q
L
L
L
G
N
G
E
A
Y
R
R
A
N
Q
R
F
V
R
A
M
G
R
I
S
D
E
V
K
A
R
R
F
D
DRGLSQGMPFIWQALDPGNIPFYLSV
23
Fugue
55.04
10%
-135
- C4 -
-
2LSE
-
?
A:
[1-101]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
E
E
R
-
K
-
K
L
L
E
K
L
E
K
I
L
D
E
V
T
D
G
A
P
D
E
A
R
E
R
--
I
E
K
L
A
K
--
D
V
K
D
E
L
-------------------
E
E
G
D
A
K
N
M
-
I
E
K
F
R
D
E
M
E
Q
M
---------
Y
K
D
A
---
P
N
A
V
M
E
Q
L
L
E
E
I
E
K
L
L
K
K
A
G
S
L
V
P
R
G
S
Y
LEHHHHHH-----------------------------------------------------------------------------------------------------------------------
16
Fugue
53.41
18%
-27
- C3 -
-
4OMH
1
COTB2_STRMJ
A:
[13-292]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------IGRSSVRPY
L
E
E
C
T
R
R
F
Q
E
M
F
D
R
H
VV
T
R
P
T
K
V
E
L
T
D
A
E
L
R
E
V
I
D
D
C
N
A
A
V
APLG
K
T
V
S
D
E
R
W
I
S
Y
V
G
V
V
L
W
S
Q
S
P
R
H
I
K
D
M
-
E
A
F
K
A
V
C
V
L
N
C
V
T
F
V
W
D
D
M
D
----------
P
A
--
L
H
D
F
G
L
F
L
P
Q
L
R
------
K
I
C
E
K
Y
Y
G
P
E
D
A
E
V
A
-
Y
E
A
A
R
A
L
V
T
S
D
---------
H
M
F
R
---
D
S
P
I
K
A
A
L
C
T
T
-----
S
P
E
Q
Y
F
R
F
R
V
T
D
IG
V
D
F
W
M
K
M
S
YPIYRH
P
E
F
T
E
H
A
K
T
S
L
A
A
R
M
T
T
R
G
L
T
I
V
N
D
F
Y
S
Y
D
R
E
V
S
L
GQITN
C
F
R
L
C
DVSD
E
T
A
F
K
E
F
F
Q
A
R
L
D
D
M
I
E
D
I
E
C
I
K
A
FD
Q
L
T
Q
D
V
F
L
D
L
I
Y
G
N
F
V
W
T
T
S
N---------------
2
PsiBlast_PDB
50.28
33%
61
- C3 -
-
2IX3
-
EF3A_YEAST
A:
[365-415]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
V
E
--
Y
I
A
A
I
G
A
D
L
I
D
E
R
I
I
-
D
Q
Q
A
------
W
F
T
-
H
I
T
P
Y
M
T
I
F
L
H
-
E
K
K
A
K
D
I
L
D
E
F
---------
R
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
50.11
15%
-31
- C1 -
-
1BVZ
-
NEPU2_THEVU
A:
[503-585]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
N
V
R
S
W
-
H
A
D
K
Q
A
N
-
L
-
Y
A
F
V
R
T
V
Q
D
Q
H
V
G
V
V
L
N
N
--------------------------------------
R
G
E
K
Q
T
V
L
L
Q
V
P
E
S
G
G
K
T
W
L
D
C
L
---------
T
G
E
E
---
V
H
G
K
Q
G
Q
L
K
L
T
L
R
P
Y
Q
G
M
I
L
W
N
G
R
-----------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.48
33%
66
- C3 -
-
2IW3
1
EF3A_YEAST
A:
[365-415]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
V
E
--
Y
I
A
A
I
G
A
D
L
I
D
E
R
I
I
-
D
Q
Q
A
------
W
F
T
-
H
I
T
P
Y
M
T
I
F
L
H
-
E
K
K
A
K
D
I
L
D
E
F
---------
R
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
48.98
33%
63
- C3 -
-
2IWH
1
EF3A_YEAST
A:
[365-415]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
V
E
--
Y
I
A
A
I
G
A
D
L
I
D
E
R
I
I
-
D
Q
Q
A
------
W
F
T
-
H
I
T
P
Y
M
T
I
F
L
H
-
E
K
K
A
K
D
I
L
D
E
F
---------
R
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
47.85
33%
60
- C3 -
-
2IX8
-
A:
[1359-1410]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
V
E
--
Y
I
A
A
I
G
A
D
L
I
D
E
R
I
I
-
D
Q
Q
A
------
W
F
T
-
H
I
T
P
Y
M
T
I
F
L
H
-
E
K
K
A
K
D
I
L
D
E
F
---------
R
K
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
39.61
11%
-220
- C3 -
-
2L0F
-
POLI_HUMAN
B:
[687-705]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
Y
E
L
A
E
A
V
Q
K
E
L
-
L
A
E
W
K
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
34.44
17%
-86
- C3 -
-
2KTF
-
B:
[687-704]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
Y
E
L
P
E
A
V
Q
K
E
L
-
L
A
E
W
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
33.28
10%
-147
- C3 -
-
2KWU
-
POLI_MOUSE
A:
[688-707]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
V
F
Y
E
L
P
E
E
V
Q
K
E
L
-
M
A
E
W
E
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
29.72
13%
-278
- C3 -
-
1TX9
-
SCAFD_BPPHS
B:
[78-109]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
A
A
V
I
A
Y
Y
V
H
P
V
N
I
Q
T
A
C
L
I
M
E
G
A
E
--
F
T
E
N
I
I
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
27.87
20%
235
- C3 -
-
1DU1
-
A:
[1-20]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
-
A
Q
K
A
K
A
E
E
R
K
R
---------
R
K
M
S
---
R
G
L
--------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
27.34
20%
114
- C3 -
-
5HYP
-
?
B:
[18-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
D
K
L
-
A
D
A
Y
N
T
L
L
T
E
H
---------
E
K
L
R
---
D
E
Y
Y
T
L
I
D
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
27.14
22%
-
* C3 *
-
3HTU
-
CHMP6_HUMAN
B:
[10-44]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
S
R
V
T
E
Q
D
K
A
I
L
Q
-
L
K
Q
Q
R
D
K
L
R
Q
Y
---------
Q
K
R
I
---
A
Q
Q
L
E
R
E
----------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
25.89
16%
250
- C3 -
-
3MQP
-
APR_HUMAN
B:
[1-25]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
L
E
V
E
C
-
A
T
Q
L
R
R
F
G
D
K
L
---------
N
F
R
Q
---
K
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
25.57
11%
-
- C3 -
-
4M5B
4
?
A:
[41-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
---
A
M
A
I
G
S
A
F
A
F
T
I
M
M
F
N
V
------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
22.28
50%
-
- C2 -
-
3V7I
-
?
A:
[29-50]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
H
P
H
-
A
-
P
W
A
P
R
I
D
G
I
A
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
17.89
17%
-
- C3 -
-
4LH9
-
HETR_NOSS1
A:
[257-279]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
P
E
R
W
D
E
A
-
M
Q
E
L
D
E
I
I
R
T
W
---------
A
D
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------