@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : ABR23219_1_PB: (2018-03-14 )
NCIANILNINQAVIATGCIPAGGQRLIRVGSSHSYLIRATTSCGLGLTTTQRFINGESVASGGRC
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------........-.-10.....--...20--...------.---.....30........40..---......50.......-.60....---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
I
A
N
I
LN-I-
N
Q
A
V
I
AT--GCIP---AGG------
Q
---
R
L
I
R
VGSS
H
S
Y
L
I
R
A
TTSC---GLG
L
T
T
T
Q
R
FINGES-VASGGRC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
Fugue
88.49
76%
-132
* C3 *
-
2MM2
-
?
A:
[1-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
A
N
I
L
N
-
I
-
N
E
V
V
I
A
T
--
G
C
V
P
---
A
G
G
------
N
---
L
I
I
R
V
G
S
D
H
S
Y
L
I
R
A
T
V
S
C
---
G
L
S
L
N
P
S
Q
S
F
I
N
G
E
S
-
L
A
S
G
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
88.49
76%
-132
- C3 -
-
2MM2
-
?
A:
[1-65]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
T
A
N
I
L
N
-
I
-
N
E
V
V
I
A
T
--
G
C
V
P
---
A
G
G
------
N
---
L
I
I
R
V
G
S
D
H
S
Y
L
I
R
A
T
V
S
C
---
G
L
S
L
N
P
S
Q
S
F
I
N
G
E
S
-
L
A
S
G
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
85.39
80%
-143
- C3 -
-
2MM0
-
?
A:
[1-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
A
N
I
L
N
-
I
-
N
E
A
V
I
A
T
--
G
C
V
P
---
A
G
G
------
E
---
L
R
I
F
V
G
S
S
H
S
Y
L
I
K
A
T
S
S
C
---
G
L
S
L
T
-
N
Q
V
F
I
N
G
E
S
-
V
Q
S
G
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
85.09
78%
-143
- C3 -
-
2MM0
-
?
A:
[1-64]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
C
V
A
N
I
L
N
-
I
-
N
E
A
V
I
A
T
--
G
C
V
P
---
A
G
G
------
E
---
L
R
I
F
V
G
S
S
H
S
Y
L
I
K
A
T
S
S
C
---
G
L
S
L
-
T
N
Q
V
F
I
N
G
E
S
-
V
Q
S
G
G
R
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
45.55
31%
-37
- C2 -
-
1E68
-
?
A:
[1-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
K
E
F
G
-
I
-
P
A
A
V
A
G
T
V
L
N
V
V
E
---
A
G
G
WV
T
T
I
V
S
---
I
L
T
A
V
G
S
G
G
L
S
L
L
A
A
A
--------
G
R
E
S
I
K
A
Y
L
K
K
E
I
-
K
K
K
G
K
R
A
V
I
A
W-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
45.16
14%
-184
- C3 -
-
2KZK
-
ATG34_YEAST
A:
[319-339]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
T
M
K
V
V
N
-
Q
-
D
G
E
T
I
L
V
--
G
K
C
A
---
D
S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
43.81
20%
-133
* C4 *
-
1DV0
-
A:
[1-45]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
E
K
E
A
I
------------------------------
E
---
R
L
K
A
L
G
F
P
E
S
L
V
I
Q
A
Y
F
A
C
---
E
K
N
E
N
L
A
A
N
F
L
L
S
Q
N
-
F
D
D
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
40.17
19%
-155
- C3 -
-
2KZB
-
ATG19_YEAST
A:
[333-358]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
T
I
E
I
E
N
-
Q
-
Y
G
E
V
I
F
L
--
G
K
Y
G
---
S
S
P
------
M
---
I
N
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
37.29
15%
5
* C2 *
-
2MU2
-
?
A:
[14-84]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LL
D
S
Y
E
A
I
L
S
-
G
-
I
E
E
T
F
A
Q
--
F
S
I
P
YD
K
E
K
V
------
R
---
E
F
I
F
K
Y
S
V
Q
D
L
L
V
R
V
A
E
D
R
---
N
L
D
V
E
V
L
N
Q
V
R
A
Q
S
L
-
A
E
K
N
A
Q
V
V--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
36.80
13%
-78
- C2 -
-
5FMF
-
T2EA_YEAST
R:
[12-160]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------LLKFVVRGFYGGSFVLVLDAILFHSVLAE
D
D
L
K
Q
L
L
S
-
I
-
N
K
T
E
L
G
P
--
L
I
A
R
---
L
R
S
------
D
---
R
L
I
S
I
H
K
Q
R
V
----------------
E
R
V
Y
Y
Y
V
K
Y
P
H
-
A
I
P
N
G
Y
M
CPICLTKYTQLEAVQLLNFDRTEFLCSLCDEPLVEDD--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
36.21
13%
-152
* C5 *
-
1MJO
-
METJ_ECOLI
D:
[64-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
G
Q
P
L
P
D
D
A
D
-
L
R
K
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
35.87
37%
-6
- C5 -
-
2V5Y
-
PTPRM_HUMAN
A:
[536-567]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
T
Y
S
F
T
I
R
A
S
T
A
K
---
G
F
G
P
P
A
T
N
Q
F
T
T
K
I
S
-
A
P
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
35.15
23%
-103
- C4 -
-
4ZBJ
-
D:
[2-22]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
Q
D
L
I
D
M
---
G
Y
G
Y
D
E
S
D
S
F
I
D
N
S
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
31.64
25%
9
- C2 -
-
4M0M
3
?
A:
[13-740]
EQKVK
T
V
T
L
S
F
L
G
TGQHREKVHH
I
L
T
S
F
H
N
T
I
S
E
V
N
KDNPT
V
A
M
R
M
F
D
G
PGSEPKSGDSKDPIPGT
Y
I
Y
N
PKDN
S
K
I
L
I
S
P
V
I
S
Q
T
I
T
N
A
I
Q
K
L
T
GNLAGEG
I
E
H
L
L
F
E
A
V
L
Y
L
N
D
I
I
E
K
N
G
GKLPE
T
V
N
L
H
G
F
S
R
G
A
D
T
C
M
R
M
A
N
L
L
Y
Q
LYPD
I
K
V
N
L
F
L
I
D
Q
V
P
G
PGKRDDPHSYTVPPNVE
H
F
E
S
T
L
M
LHEYRPGF
D
P
Q
H
SGRYVIADPEKTK
V
V
V
K
P
Y
Y
G
E
HNTGNRVTEDPNT
N
H
T
A
I
L
L
N
D
D
M
N
R
F
C
R
E
T
--
G
S
L
P
---
S
V
G
------
I
SP
P
I
I
A
R
V
G
D
K
K
E
E
V
R
T
H
S
E
--------
L
S
P
E
K
R
F
E
L
L
C
G
M
K
E
N
E
W
G
Y
A
K
LTKKYHER
S
I
L
S
K
REDYVQDSRLFVN
Q
E
H
R
E
L
F
K
Q
L
Y
P
K
S
F
N
W
F
FEKNHGGQTK
K
E
E
V
I
V
E
L
K
S
L
S
E
DPRY
E
H
F
F
S
S
L
A
K
H
F
QINENNIAGTLPEPSGIDRDEKSSFGQPPVRD
R
L
S
Y
L
Q
H
S
L
T
S
I
A
N
Y
Y
H
YHCDEKS
S
T
N
E
S
V
K
N
L
L
L
E
R
V
K
E
S
R
T
KP
D
S
E
A
I
K
H
L
E
Q
T
M
D
E
V
R
Q
I
L
E
S
K
NEKG
F
L
W
Q
Q
I
N
H
ISPN
A
R
Q
Y
C
E
Q
V
K
A
A
L
R
E
H
L
E
HNQVLS
D
T
Q
K
E
E
I
R
K
A
M
D
R
M
D
N
I
V
N
DSSKD
S
Q
Q
K
Y
R
E
I
R
R
E
V
I
E
L
N
A
K
ATTPED
D
N
Q
L
T
R
S
H
F
Q
K
A
Y
F
EGDTQKTLN
L
E
S
L
S
Q
T
L
N
Q
L
S
KAHYGETS
M
T
D
K
I
T
Q
R
L
D
G
Y
K
N
R
N
W
F
W
N
S
V
K
E
V
L
N
F
F
NIPLP
K
L
H
S
E
V
K
E
Q
I
A
D
K
L
K
E
R
L
V
D
L
K
E
K
GMGND
V
N
A
I
T
R
E
L
G
K
A
R
E
D
L
I
E
H
Y
K
K
TG
E
L
D
K
I
I
N
K
S
M
E
E
L
L
V
A
R
K
6
HHSearch
31.48
13%
41
- C5 -
-
1CMC
-
METJ_ECOLI
B:
[64-79]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
F
T
G
Q
P
L
P
D
D
A
D
-
L
R
K
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
30.38
17%
-153
- C3 -
-
1C9O
1
CSPB_BACCL
B:
[11-34]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
E
K
G
------
Y
---
G
F
I
E
V
E
G
G
S
D
V
F
V
H
F
T
A
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
29.51
13%
-164
- C3 -
-
2ES2
-
CSPB_BACSU
A:
[11-34]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
---
E
K
G
------
F
---
G
F
I
E
V
E
G
Q
D
D
V
F
V
H
F
S
A
I
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
27.01
16%
11
- C2 -
-
2L7X
-
?
A:
[1-77]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------RE
L
K
P
Q
T
CT
I
C
E
T
T
P
V
N
-
A
-
I
D
A
E
M
H
D
--
L
N
C
S
---
Y
N
I
------
C
---
P
Y
C
A
S
R
L
T
S
D
G
L
A
R
H
V
T
Q
C
P
K
R
K
E
K
V
E
E
T
E
L
Y
L
N
L
E
R
-
I
P
W
V
V
R
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
26.31
13%
-167
- C1 -
-
3LUY
-
?
A:
[297-319]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
S
W
M
L
P
Q
G
------
G
V
R
L
D
-
D
S
H
L
P
D
D
W
Q
-
N
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
13.76
22%
0
- C- -
-
4RZ0
-
?
B:
[9-60]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
K
S
S
L
G
---
G
L
G
V
F
S
L
E
G
I
K
K
N
E
I
-
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
User Run . : Multi Template Modeling Result:
(1 SA)
.........10........20........30........40........50........60....
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
N
C
I
A
N
I
LNI
N
Q
A
V
I
ATGCIPAGG
Q
R
L
I
R
VGSS
H
S
Y
L
I
R
A
TTSCGLG
L
T
T
T
Q
R
FINGESVASGGRC
24
82.61
100%
-145
- C- -
0.38
M024
-
A:
[1-65]
N
C
I
A
N
I
L
N
I
N
Q
A
V
I
A
T
G
C
I
P
A
G
G
Q
R
L
I
R
V
G
S
S
H
S
Y
L
I
R
A
T
T
S
C
G
L
G
L
T
T
T
Q
R
F
I
N
G
E
S
V
A
S
G
G
R
C