@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0003: (2017-12-13 )
MYQVGNFVEMKKPHACTIKSTGKKANRWEITRVGADIKIKCSNCEHVVMMGRYDFERKMNKIID
Atome Classification :
(20 SA)
------------------------------------------------------------------------.....---....10------------........20--.---.-.......30........40.......----------.50........60--....----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------MYQVG---
N
F
V
EMK------------KP
H
A
C
T
I
KS---T---G-KKAN
R
W
E
I
T
R
VG
A
D
I
K
I
KCSNC
E
H
V
V
----------
M
MGR
Y
D
F
E
R
K
M
N
---
K
IID----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
56.53
18%
-253
- C6 -
-
5K2M
-
?
E:
[9-36]
-----------------------------------------------------------------------------------------------------------------------
S
E
I
E
I
G
E
V
E
L
H
Q
I
V
E
C
P
V
C
G
A
E
L
----------
E
V
V
S
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
54.92
37%
-358
- C4 -
-
3FI9
-
?
A:
[97-123]
---------------------------------------------------------------------------------------------------------------------
K
G
N
A
E
I
A
A
Q
L
G
K
D
I
K
S
Y
C
P
D
C
K
H
V
I
----------
I
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
54.68
18%
-226
- C6 -
-
5K2M
-
?
F:
[9-36]
-----------------------------------------------------------------------------------------------------------------------
S
E
I
E
I
G
E
V
E
L
H
Q
I
V
E
C
P
V
C
G
A
E
L
----------
E
V
V
S
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
53.76
34%
101
- C4 -
-
5SWB
6
?
A:
[17-470]
-------------------------------------------------------------------K
P
V
I
K
M
Y
Q
I
G
---
D
-----------------
K
P
D
--
N
L
D
E
---
L
---
L
-
A
N
A
N
K
I
I
E
E
K
V
G
A
K
L
D
I
Q
Y
------------------
L
G
W
G
D
Y
G
K
K
M
S
---
V
I
T
S
S
GENYDIAFADN
Y
I
V
N
A
Q
K
GAYADL
T
E
L
Y
K
KEG
K
D
L
Y
K
A
LD
P
A
Y
I
K
G
N
TVNGKIYAVPVAANV
A
S
S
Q
N
F
A
F
N
G
T
L
L
A
K
Y
GIDISGVTSYETL
E
P
V
L
K
Q
I
K
E
K
APDVVP
F
A
I
G
KV
F
I
P
S
D
NFDYPVANGLPFVIDLEGDTT
K
V
V
N
RYEV
P
R
F
K
E
H
L
K
T
L
H
K
F
Y
E
A
GYIPKDVATSD
T
S
F
D
LQQDTWF
V
R
E
E
T
V
G
PADYGN
S
L
L
S
R
V
A
N
K
D
I
Q
I
K
P
ITNFIKK
N
Q
T
T
Q
V
A
N
F
V
I
SNNSKN
K
E
K
S
M
E
I
L
N
L
L
N
TN
P
E
L
L
N
G
L
V
Y
GPEGKN
W
E
K
I
E
GKEN
R
V
R
V
L
DGYKGNTHMGGWNTGNNWI
L
Y
I
N
ENVT
D
Q
Q
I
E
N
S
K
K
E
L
A
E
A
K
E
S
PALGFIFNTDNV
K
S
E
I
S
A
I
A
N
T
M
Q
Q
F
D
T
A
I
N
T
GTVD
P
D
K
A
I
P
E
L
M
E
K
L
K
S
EG
A
Y
E
K
V
L
N
E
M
Q
K
Q
Y
D
E
F
L
K
N
K
KLE
33
Fugue
46.86
15%
41
* C4 *
-
1S12
-
?
A:
[1-94]
------------------------------------------------------------------------
M
I
K
V
T
V
T
N
S
F
F
E
V
T
G
H
A
PD
K
T
L
C
A
S
V
S
L
L
T
Q
H
V
A
N
---
F
---
L
-
K
A
E
K
K
A
K
I
K
K
E
S
G
Y
L
K
V
K
F
E
E
L
E
N
C
E
----------
V
K
V
L
A
A
M
V
R
S
L
K
---
E
L
E
Q
K
F
P
SQ
I
R
V
E
V
I
D
N
G
S-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
45.99
23%
-1
- C6 -
-
2XIG
-
FUR_HELPY
A:
[64-124]
------------------------------------------------------------------------
V
Y
R
I
L
---
N
F
L
E
--------------
K
E
N
F
I
S
V
L
E
---
T
---
S
-
K
S
G
R
R
Y
E
I
A
A
K
E
H
H
D
H
I
I
C
L
H
C
G
K
I
I
----------
E
F
A
D
P
E
I
E
N
R
Q
N
---
E
V
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
HHSearch
44.31
13%
-393
* C6 *
-
4ILO
-
?
B:
[222-236]
----------------------------------------------------------------------------------------------------------------------------------
H
L
V
F
C
E
H
C
S
R
I
L
----------
Y
W
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
36
Fugue
43.96
25%
38
- C4 -
-
2NCL
-
BOLA3_HUMAN
A:
[1-81]
------------------------------------------------------------------ATQT
E
G
E
L
R
V
T
---
Q
I
L
K
E
K
------------
F
P
R
A
T
A
I
K
V
---
T
D
IS
G
-
G
C
G
A
M
Y
E
I
K
I
E
S
E
E
F
K
E
K
R
T
V
Q
Q
H
Q
M
----------
V
N
Q
A
L
K
E
E
I
K
E
M
HG
L
R
I
F
T
S
V
PKR-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
42.01
18%
4
- C3 -
-
2JOX
-
CHUR_HUMAN
A:
[1-106]
---------------------------------------------------------------------------
C
G
---
D
C
V
E
K
E
------------
Y
P
N
R
---
G
N
---
T
---
C
-
L
E
N
G
S
F
L
L
N
F
T
G
C
A
---
V
C
S
K
R
D
F
M
L
----------
I
T
N
K
S
L
K
E
E
D
G
E
---
E
I
V
T
Y
D
H
L
C
KNCHHVI
A
R
H
E
Y
T
F
S
I
M
DE
F
Q
E
Y
T
M
L
C
LLC
G
K
A
E
D
T
I
S
I
L
PDDPRQ-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
40.92
20%
39
- C4 -
-
4JGL
2
?
A:
[18-169]
GN
A
P
S
G
Y
L
M
P
A
I
SANNFCGDFTT
M
T
P
D
Y
G
Y
L
M
PEKG
L
F
L
K
M
H
D
I
RG
A
Y
G
I
N
I
Y
T
Y
V
M
DGD
N
I
Q
C
T
P
G
H
F
V
M
I
V
P
R
G
G
---
D
K
L
E
I
------------------
T
I
K
K
---
S
---
S
M
K
N
T
P
S
F
T
F
I
P
T
P
-----
D
C
E
N
S
A
Y
V
A
TEKVAG
K
Y
Y
Y
L
C
G
D
A
E
A
R
Y
K
F
E
---
D
L
F
E
DERC
A
E
F
K
N
L
V
D
N
YGK------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
40.40
33%
-155
- C5 -
-
3H0G
-
RPAB4_SCHPO
L:
[29-52]
-----------------------------------------------------------------------------------------------------------------------
A
R
N
T
I
Q
A
--
K
E
-
V
I
R
C
R
E
C
G
H
R
V
----------
M
Y
K
M
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.30
17%
-165
- C6 -
-
1XJH
-
A:
[24-59]
----------------------------------------------------------------------------------------------------------------------
E
E
V
D
S
I
L
A
E
D
G
E
I
D
M
H
C
D
Y
C
G
N
H
Y
----------
L
F
N
A
M
D
I
A
E
I
R
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
37.25
19%
-301
- C5 -
-
5FMF
-
RPAB4_YEAST
L:
[43-58]
---------------------------------------------------------------------------------------------------------------------------------
T
D
A
V
R
C
K
D
C
G
H
R
I
----------
L
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
35.27
33%
-73
- C6 -
-
2LO2
-
A:
[7-24]
---------------------------------------------------------------------------------------------------------------------------------
S
Q
Y
I
H
C
E
N
C
G
R
D
V
----------
S
A
N
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
34.11
10%
93
- C2 -
-
4IZX
2
?
A:
[2-140]
------------------------------------------------------------T
Q
V
S
S
G
Q
T
Y
K
I
T
N
V
K
A
G
---
T
V
I
D
L
S
------------
G
E
D
N
K
S
I
I
G
Y
P
Y
H
---
S
-
G
K
N
Q
Q
W
T
F
N
W
T
G
K
A
W
T
L
R
S
A
S
-------------------------
S
G
---
S
Y
L
G
I
E
G
TPADG
T
R
L
V
A
V
N
D
P
F
E
W
H
I
W
R
DEANEN
A
F
R
I
F
VPFTNYNLDLSGYGDTTPGT
P
V
Q
L
W
WTWEGLHQ
T
W
T
I
D
R
P-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
32.97
24%
-150
- C7 -
-
3WQE
-
DTHAD_DELSH
B:
[348-364]
------------------------------------------------------------------------
R
F
P
L
G
---
T
R
L
R
I
L
------------
P
N
H
A
C
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
32.53
18%
-202
- C5 -
-
1TWF
-
RPAB4_YEAST
L:
[36-57]
-----------------------------------------------------------------------------------------------------------------------
S
K
L
S
L
S
R
---
T
D
A
V
R
C
K
D
C
G
H
R
I
----------
L
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
32.41
35%
-
- C- -
-
4PS6
-
IVY_PSEAE
A:
[82-98]
------------------------------------------------------------------------------------
S
C
------------
K
P
H
D
C
--------------
G
N
N
R
L
L
V
A
F
R
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
31.68
24%
-150
* C7 *
-
3WQC
-
DTHAD_DELSH
B:
[348-364]
------------------------------------------------------------------------
R
F
P
L
G
---
T
R
L
R
I
L
------------
P
N
H
A
C
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
30.90
29%
-149
- C6 -
-
3MHS
-
SGF11_YEAST
C:
[66-86]
-------------------------------------------------------------------------------------------------------------------------------
E
S
S
Q
Y
I
H
C
E
N
C
G
R
D
V
----------
S
A
N
R
L
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------