@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0050: (2017-12-14 )
MLESKKTTRYVFYVYLMLLTWGILFKFETNPEFIAFFLAPRYINWIPFSEPLIVDGKIVFAEMLFNLISFIPLGVCFPLIKTNLSSLRIVGTGFLISLLFECLQYILAIGITDITDLTLNTLGVCVGLLIYQIFIRVFKSQTRKWINILGMLSLGFAYLVLLLLHLIGV
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10------.........20-------........30........40......-..50......------..60......--..70........80...-.....90...--------.....100-........110.----......120.......130.....---------...140....-----...150.......160---.--------.......----------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLESKKTT
R
Y
-------
V
F
Y
V
Y
L
M
L
L
T
W
-------
G
I
L
F
K
FETNP
E
F
I
A
F
F
LAP
R
Y
I
N
W
IP-FSE
P
L
I
VD
G
K
------
I
V
F
A
E
M
L
F
N
L
--
I
S
F
I
P
L
G
V
C
F
P
L
I
KTNL-S
S
L
R
I
V
G
T
G
F
--------
L
I
S
L
L
F
E
--
C
L
Q
Y
I
L
A
IGITD----
I
T
D
L
T
L
N
T
L
G
V
C
V
G
L
L
I
Y
-
Q
I
F
I
R
---------
V
F
K
S
Q
T
R
K
W
I
-----
N
I
L
G
M
L
S
L
G
F
A
Y
L
V
L
----
L
--------
L
L
H
LIGV----------------------------------------------------------------------------------------
16
Fugue
61.89
18%
-100
- C3 -
-
4FDT
1
?
A:
[21-425]
MQT
K
I
Q
K
Y
A
GTAMPYPNRTDGMTPF
Y
I
N
H
L
G
R
H
GARFPTSR
K
A
L
D
K
V
E
K
V
L
V
S
A
Q
Q
E
NGLT
S
E
G
M
A
L
L
S
M
I
R
R
L
S
R
L
F
DGQWGKLS
K
L
G
E
T
E
Q
E
G
I
A
G
R
M
I
R
N
YPQLFSNS
A
K
I
E
A
I
A
T
YV
P
R
S
I
N
S
M
D
A
F
L
S
C
M
I
R
H
NPA
L
Q
V
Q
R
S
E
G
KQYNHILRFFDLN
K
S
Y
V
N
Y
K
E
K
G
D
W
L
P
I
Y
-------
K
A
F
V
H
K
K
I
S
P
V
-------
P
I
M
K
K
F
L
L
N
P
E
Q
-------------------
Y
L
D
K
E
A
------
E
E
F
V
M
A
L
F
S
V
--
A
A
I
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P
D
----
T
S
I
P
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N
L
-
E
D
L
-
F
T
L
D
E
W
--------
H
R
Y
W
Q
T
Q
--
N
L
R
Q
Y
M
S
K
S
S
A
P
----
V
G
K
M
----
L
P
V
A
I
A
W
P
L
L
-
S
E
F
I
R
---------
S
A
Q
E
V
I
S
G
K
S
-----
D
Y
Q
A
N
F
R
F
A
H
A
E
T
V
I
----
P
--------
F
V
S
L
M
G
I
EKTDVQVCRPDSVSVYWKDYEISPMA
A
N
V
Q
W
L
F
Y
R
D
RDQ
R
I
W
V
K
I
L
L
NE
E
A
A
A
L
PISTACFPYYS
W
E
K
T
R
I
F
F
N
Q
R
I
E
M
A
K
K
T
L
S
V
F
N
17
Fugue
59.25
15%
-193
* C4 *
-
5TJ5
-
VATO_YEAST
B:
[1-213]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------MN
K
E
S
K
D
D
D
M
S
L
G
K
F
S
F
-------
S
H
F
L
Y
Y
V
Y
G
L
Y
-------
K
L
F
T
G
H
G
S
D
I
N
F
G
K
F
L
L
R
T
S
P
Y
M
W
A
N
-
L
G
I
A
L
C
V
G
L
S
------
V
V
G
A
A
W
G
I
F
I
--
T
G
S
S
M
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G
A
G
V
R
A
P
R
I
T
T
-
K
N
L
I
S
I
I
F
C
E
--------
V
V
A
I
Y
G
L
--
I
I
A
I
V
F
S
S
K
S
N
L
----
Y
T
G
Y
S
L
F
W
A
G
I
T
V
G
A
S
N
L
-
I
C
G
I
A
---------
V
G
I
T
G
A
T
A
A
I
-----
S
F
V
K
I
L
V
I
E
I
F
G
S
I
L
----
G
--------
L
L
G
L
I
V
G
L
L
M
A
G
KASEFQ-----------------------------------------------------------------------------
21
Fugue
57.91
19%
-55
- C2 -
-
4FYP
-
VSP1_ARATH
A:
[34-261]
----------------------------------------------------------------------------------------------------------------------------------------------------------G
L
S
I
N
Y
PN
C
R
S
W
H
L
G
V
E
T
S
N
I
I
N
F
DTVPANC
K
A
Y
V
E
D
Y
L
I
T
S
-------
K
Q
Y
Q
Y
D
S
K
T
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N
K
E
A
Y
F
Y
A
K
G
L
A
L
K
N
D
-
T
V
N
V
W
I
F
D
L
D
DTLLSS
I
P
Y
Y
A
K
Y
G
Y
G
--
T
E
N
T
A
P
G
A
Y
W
S
W
L
E
S
G
E
-
S
T
P
G
L
P
E
T
L
H
--------
L
Y
E
N
L
L
E
L
G
I
E
P
I
I
I
S
D
R
W
K
K
----
L
S
E
V
T
V
E
N
L
K
A
-
V
G
V
T
K
W
K
H
L
I
L
K
PNGSKLT
Q
V
V
Y
K
S
K
V
R
N
S
L
V
K
K
GY
N
I
V
G
N
I
G
D
Q
W
A
D
L
V
E
D
T
P
G
R
--------
V
F
K
L
P
N
P
LYY
V
P
S
L
E
H
H
H
H----------------------------------------------------------------------------
14
Fugue
56.96
11%
-42
* C3 *
-
4FQG
-
TCRG1_HUMAN
A:
[1-186]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
H
M
K
R
E
E
A
I
Q
-------
N
F
K
A
L
L
S
D
M
V
R
SSDVS
W
S
D
T
R
R
T
L
R
K
D
H
R
W
E
S
G
S
L
L
E
R
E
E
K
E
K
L
-
F
N
E
H
I
E
A
L
T
K
------
K
K
R
E
H
F
R
Q
L
L
D
E
T
S
A
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L
T
S
T
W
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E
V
K
K
I
I
K
E
D
P
R
C
I
K
F
S
S
--------
S
D
R
K
K
Q
R
--
E
F
E
E
Y
I
R
D
K
Y
I
T
----
A
K
A
D
F
R
T
L
L
K
E
--
T
K
F
I
T
-
Y
R
S
K
K
---------
L
I
Q
E
S
D
Q
H
L
K
-----
D
V
E
K
I
L
Q
N
D
K
R
Y
L
V
L
----
D
--------
C
V
P
E
E
R
R
K
L
I
V
A
Y
V
D
D-------------------------------------------------------------------------------
15
Fugue
54.92
18%
-94
* C2 *
-
5HGZ
3
NAA60_HUMAN
A:
[2-212]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------MT
E
E
E
R
S
S
A
L
S
E
V
S
L
R
L
L
C
HDD--
I
D
T
V
K
H
L
C
G
D
W
----------
F
P
I
E
Y
P
D
S
W
Y
R
D
I
T
S
N
K
K
F
F
S
L
A
-
A
T
Y
R
G
A
I
V
G
M
------
I
V
A
E
I
K
N
R
T
K
--
I
H
K
E
D
G
D
I
L
A
S
N
F
S
V
D
T
-
Q
V
A
Y
I
L
S
L
G
V
VKEFRKHG
I
G
S
L
L
L
E
--
S
L
K
D
H
I
S
T
T
A
Q
D
HCK
A
I
Y
L
H
V
L
T
T
N
N
T
A
I
N
F
Y
E
N
-
R
D
F
-----------
K
Q
H
H
Y
L
P
Y
Y
Y
-----
S
I
R
G
V
L
K
D
G
F
T
Y
V
L
Y
----
I
NGGHPPWT
I
L
D
Y
I
Q
H
L
G
S
A
L
ASLSPCSIPH-------------------------------------------------------------------------
18
Fugue
49.10
17%
-66
- C2 -
-
5U35
5
?
A:
[1-124]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------G
S
H
M
T
E
E
E
V
R
K
-------
I
M
E
K
L
K
K
A
F
K
Q
-------
G
-------
N
P
E
Q
I
V
S
L
L
S
P
D
V
K
V
D
V
----
G
N
Q
S
F
S
G
S
------
E
E
A
E
K
A
A
R
K
L
--
M
K
F
--------
V
D
R
V
E
V
-
R
D
V
R
V
F
E
N
A
V
--------
M
I
A
V
E
F
E
--
V
N
---------------------------
G
Q
R
Y
K
-
M
I
F
T
F
---------
Y
V
E
N
G
K
V
S
M
V
-----
S
I
--
Y
I
S
P
T
M
K
K
L
M
K
----
Q
--------
I
L
N
Y
-------------------------------------------------------------------------------------------
2
PsiBlast_PDB
41.85
29%
-226
- C5 -
-
1CKN
1
MCE_PBCV1
A:
[172-225]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
F
K
N
V
P
E
D
P
A
I
L
---
R
Y
K
E
W
I
P
-
L
E
H
P
T
I
I
K
D
H
------
L
K
K
A
N
A
I
Y
H
T
--
D
G
L
I
I
M
S
V
D
E
P
V
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
40.72
29%
-184
- C5 -
-
1CKO
1
MCE_PBCV1
A:
[172-225]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
F
K
N
V
P
E
D
P
A
I
L
---
R
Y
K
E
W
I
P
-
L
E
H
P
T
I
I
K
D
H
------
L
K
K
A
N
A
I
Y
H
T
--
D
G
L
I
I
M
S
V
D
E
P
V
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
PsiBlast_PDB
38.67
29%
-212
- C5 -
-
1CKM
1
MCE_PBCV1
A:
[172-225]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
K
E
F
K
N
V
P
E
D
P
A
I
L
---
R
Y
K
E
W
I
P
-
L
E
H
P
T
I
I
K
D
H
------
L
K
K
A
N
A
I
Y
H
T
--
D
G
L
I
I
M
S
V
D
E
P
V
I
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
38.36
17%
-269
- C5 -
-
4CG7
-
SC61B_CANLF
C:
[74-91]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
M
S
L
L
F
I
A
S
V
----
F
--------
M
L
H
I
W
G
-----------------------------------------------------------------------------------------
13
HHSearch
36.41
29%
-252
- C5 -
-
5DJQ
-
CCOP1_PSEST
M:
[53-76]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
L
P
R
W
W
-----
F
L
L
F
I
G
T
L
V
F
G
I
L
Y
L
----
V
--------
L
Y
---------------------------------------------------------------------------------------------
12
HHSearch
36.29
14%
-365
* C5 *
-
2WWB
-
SC61B_CANLF
C:
[71-91]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
P
V
L
V
M
S
L
L
F
I
A
S
V
----
F
--------
M
L
H
I
W
G
-----------------------------------------------------------------------------------------
6
HHSearch
34.85
7%
-239
- C5 -
-
3DDL
4
?
B:
[6-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
L
T
P
G
Q
Y
S
L
----
V
F
N
M
F
S
F
T
V
A
T
M
T
A
S
F
V
F
-
F
V
L
A
R
---------
N
N
V
A
P
K
Y
R
I
S
-----
M
M
V
S
A
L
V
V
F
I
A
G
Y
H
Y
----
F
-------------------------------------------------------------------------------------------------------
20
Fugue
34.35
15%
-51
- C4 -
-
5DJE
1
ZUO1_YEAST
A:
[6-140]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
V
A
D
V
P
P
P
K
-------
K
G
T
D
Y
D
F
Y
E
A
W
-------
G
P
V
F
E
A
E
A
R
-----
F
S
K
K
T
P
I
P
S
L
G
N
M
D
S
S
K
K
E
V
E
Q
F
------
Y
A
F
W
H
R
F
D
S
W
--
R
T
F
E
F
L
D
E
D
V
P
D
D
S
S
N
R
-
D
H
K
R
Y
I
E
R
K
N
--------
K
A
A
R
D
K
K
--
K
T
A
--------
D
M
---
A
R
L
V
K
L
V
E
R
A
V
S
E
D
P
R
I
K
M
F
K
E
E
E
---------
K
K
E
K
E
R
R
K
W
E
--------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
34.10
7%
-245
- C5 -
-
3DDL
4
?
A:
[6-70]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
L
T
P
G
Q
Y
S
L
----
V
F
N
M
F
S
F
T
V
A
T
M
T
A
S
F
V
F
-
F
V
L
A
R
---------
N
N
V
A
P
K
Y
R
I
S
-----
M
M
V
S
A
L
V
V
F
I
A
G
Y
H
Y
----
F
-------------------------------------------------------------------------------------------------------
4
HHSearch
33.16
15%
-241
- C5 -
-
1BHB
-
BACR_HALSA
A:
[18-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
L
M
G
L
G
T
L
Y
F
-
L
V
K
G
M
---------
G
V
--
P
D
A
K
K
F
-----
Y
A
I
T
T
L
V
P
A
I
A
F
T
M
Y
----
L
-------------------------------------------------------------------------------------------------------
11
HHSearch
21.98
24%
-56
- C1 -
-
4XTR
-
?
G:
[15-25]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
W
R
-----
V
Y
L
L
I
V
L
L
-------------------------------------------------------------------------------------------------------------------
7
HHSearch
21.33
13%
-178
- C5 -
-
5ABB
-
PRRG_PRB01
Z:
[38-77]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
L
L
A
S
T
V
F
F
-
F
V
E
R
D
----------
R
V
S
A
K
W
K
T
S
-----
L
T
V
S
G
L
V
T
G
I
A
F
W
H
Y
----
M
-------------------------------------------------------------------------------------------------------
10
HHSearch
17.62
14%
-
- C5 -
-
2WW9
-
SC6B2_YEAST
C:
[62-78]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
V
L
F
L
S
V
G
F
I
F
S
V
----
I
--------
A
L
---------------------------------------------------------------------------------------------
9
HHSearch
15.36
6%
-70
- C5 -
-
1RH5
-
SECE_METJA
B:
[26-57]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
---------
P
T
K
D
E
Y
L
A
V
A
-----
K
V
T
A
L
G
I
S
L
L
G
I
I
G
Y
----
I
---------
I
H
V
P
------------------------------------------------------------------------------------------