@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0127: (2017-12-15 )
MMKNLNNYREISNKELQEIKGGFGVGVGIALFMAGYTIGKDLRKKFGKSC
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------...-......-10........-20..-------------.---.....30........40.....-...-50-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------MMK-NLNNYR-EISNKELQEI-KGGF-------------G---VGVGIALFMAGYTIGKDLRKKF-GKS-C--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
76.52
26%
28
- C4 -
-
1TUZ
-
DGKA_HUMAN
A:
[1-118]
----------------------------------------------------------------------------------------------------------------------------------------------------------------MAKERGLIS
P
S
D
F
A
-
Q
L
Q
K
Y
M
-
E
Y
S
T
K
K
V
S
D
V
-
L
K
L
F
-------------
E
---
D
G
-
E
M
A
K
Y
V
Q
G
D
A
I
G
Y
E
G
F
Q
Q
F
-
L
K
I
-
Y
LEVDNVP
R
H
L
S
L
A
L
F
Q
S
F
E
T
G
H
C
LNETNVTK
D
V
V
C
L
N
D
V
S
C
Y
F
S
L
L
E
G
G
R
P
E
D
KLEWS----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
71.68
22%
-
- C- -
-
4MYZ
-
?
A:
[6-72]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
I
T
-
E
L
S
-
E
I
-
E
L
E
A
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V
L
Q
E
I
-
E
A
-
L
-------------
E
---
K
L
I
S
L
S
A
L
Q
R
A
L
I
A
L
K
D
A
R
S
K
L
-
E
K
Y
-
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
66.50
27%
-
- C4 -
-
4UIF
-
?
F:
[27-61]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
A
Q
R
I
-
E
T
W
I
LR-----------
H
---
P
G
F
T
I
M
A
A
I
L
A
Y
T
I
G
T
T
Y
F
Q
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
60.96
23%
79
- C3 -
-
5MG8
1
SMC5_SCHPO
A:
[63-344]
D
L
D
N
I
K
R
E
L
S
Y
Y
N
D
A
T
K
R
K
L
D
F
M
S
S
APGW
E
D
A
Y
Q
T
Y
Q
L
L
K
E
Y
ESAFE
A
P
A
Y
G
PIYMNLKCKEKGF
A
A
L
I
E
G
F
F
R
T
D
T
F
R
T
F
I
M
SN
Y
N
D
Y
L
K
L
M
D
L
I
T
S
K
TK
Y
T
P
T
I
R
E
FSSERKKKIEDFEPPCS
R
E
K
L
Q
S
F
GFDGYVIDFLEGP
E
V
V
L
V
A
L
C
H
M
LKIHQ
I
P
I
A
KRELP
P
A
S
V
N
-
A
L
N
N
F
R
-
L
A
N
G
D
-----------------------------
P
V
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A
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A
Y
-
G
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P
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PSRSIYF
S
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N
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E
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R
K
E
E
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N
A
Q
L
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N
E
E
R
K
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Q
E
K
V
N
E
H
E
S
L
L
S
R
T
N
D
I
L
S
T
L
R
K
E
R-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
59.20
21%
-117
- C4 -
-
1HGV
-
CAPSD_BPH75
A:
[1-46]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
D
F
N
P
S
-
E
V
A
S
Q
V
T
N
Y
I
-
Q
A
I
A
-------------
A
---
A
G
V
G
V
L
A
L
A
I
G
L
S
A
A
W
K
Y
A
K
R
F
-
L
K
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
59.06
20%
-4
- C4 -
-
1FDM
-
?
?:
[1-50]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
-
G
D
D
P
A
K
-
A
A
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A
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A
-
T
E
Y
I
-------------
G
---
Y
A
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A
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V
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I
V
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A
T
I
G
I
K
L
F
K
K
F
T
S
K
A
-
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
58.60
23%
25
- C4 -
-
1VK9
1
?
A:
[2-148]
----------------------------------------------------------------------------------------------GSDK
I
H
H
H
H
H
H
VE
K
N
L
L
R
S
A
L
K
I
F
E
K
K
DLS
L
L
A
Y
SGRSIFESKDSGL
K
P
V
V
E
L
F
K
R
FDNLEG
S
L
V
I
D
KMVG
K
A
A
A
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D
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A
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L
M
N
E
-
Y
-------------
G
---
Q
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F
S
Y
D
E
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P
-
F
V
L
G
K
D
------
G
K
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M
C
P
F
E
K
L
V
LEMDD
P
E
E
I
I
R
I
V
L
S
K
F---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
55.94
29%
-206
- C4 -
-
1GVN
-
EATX_STRPY
A:
[53-73]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
K
-
R
V
N
L
F
--
D
Y
S
L
E
E
L
Q
A
V
-
H
E
Y
W
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
53.60
27%
-215
- C4 -
-
3J2P
-
?
B:
[27-61]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
H
A
Q
R
I
-
E
T
W
I
L
R
-----------
H
---
P
G
F
T
I
M
A
A
I
L
A
Y
T
I
G
T
T
H
F
Q
R
A
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
52.33
24%
-68
- C4 -
-
3F75
1
?
P:
[69-89]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
M
N
H
F
G
-
D
L
S
R
D
E
F
R
R
K
-
Y
L
G
F
-------------
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
50.99
18%
23
- C4 -
-
4UOX
9
PAT_ECOLI
A:
[7-459]
-------------------------------------------------------------------------------------------------------------SAS
A
L
A
C
S
A
H
A
L
N
L
I
E
KRTLD
H
E
E
M
K
A
L
N
R
E
V
I
E
Y
F
K
E
HVN
P
G
F
L
E
Y
R
K
S
V
TAGGDYG
A
V
E
W
Q
A
G
-
S
L
N
T
L
V
-
D
T
Q
G
Q
E
F
I
D
C
-
L
G
G
F
-------------
G
IFN
V
G
H
R
N
P
V
V
V
S
A
V
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N
Q
L
A
K
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P
L
H
-
S
Q
E
-
L
LD
P
L
R
A
M
L
A
K
T
L
A
A
L
TPGKL
K
Y
S
F
F
C
N
S
G
T
E
S
V
E
A
A
L
K
L
A
K
A
Y
Q
S
PRGKF
T
F
I
A
T
S
GAFHGKS
L
G
A
L
S
A
TAKSTFRKPFMPLLPG
F
R
H
V
PFGN
I
E
A
M
R
T
A
L
N
E
C
K
K
T
GDDVA
A
V
I
L
E
PIQGEGGVILPPPG
Y
L
T
A
V
R
K
L
C
D
E
F
G
A
L
M
I
L
D
EVQTGMGRTGKMFACEHENVQPD
I
L
C
L
A
KALGGGV
M
P
I
G
A
T
I
A
T
EEVFSVLFDNPFL
H
T
T
T
FGGN
P
L
A
C
A
A
A
L
A
T
I
N
V
L
L
E
Q
N
L
P
A
Q
A
E
Q
K
G
D
M
L
L
D
G
F
R
Q
L
A
R
E
Y
PDLVQ
E
A
R
G
K
GML
M
A
I
E
F
VD
N
E
I
G
Y
N
F
A
S
E
M
F
R
Q
R
V
L
V
A
G
T
LNNA
K
T
I
R
IEPPLTLT
I
E
Q
C
E
L
V
I
K
A
A
R
K
A
L
A
A
M
R
V
S
V
E
EA
13
HHSearch
48.74
16%
-216
- C4 -
-
2XRH
1
?
A:
[9-27]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
D
F
S
-
K
T
S
D
E
D
L
A
K
M
-
A
G
V
V
-------------
A
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
48.58
12%
6
- C4 -
-
4W4M
-
PRGK_SALTY
A:
[19-79]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
-
D
K
D
L
L
K
-
G
L
D
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E
Q
A
N
E
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A
V
L
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M
H
N
I
E
A
N
K
I
D
SG
K
---
L
G
Y
S
I
T
V
A
E
P
D
F
T
A
A
V
Y
W
I
K
T
Y
-
Q
L
P
-
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
45.00
17%
-36
- C4 -
-
5HB6
-
B:
[9-27]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
A
D
D
I
R
-
A
M
N
R
M
Q
R
Q
R
V
-
V
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
44.50
12%
-165
- C4 -
-
4ZGJ
-
?
M:
[167-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
-
D
W
S
E
A
Q
L
A
T
L
-
I
T
Q
D
-------------
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
42.36
12%
-169
- C4 -
-
4ZGD
-
?
E:
[167-183]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
E
-
D
W
S
E
A
Q
L
A
T
L
-
I
T
Q
D
-------------
C
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
40.07
13%
-134
- C4 -
-
2Z5B
-
POC4_YEAST
A:
[97-112]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
H
M
A
T
I
I
S
E
R
F
-
N
R
P
-
C
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
38.77
15%
7
- C2 -
-
2L95
-
?
A:
[57-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
I
N
H
L
A
-
D
L
T
P
E
E
F
A
Q
R
-
S
G
K
K
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
33.47
12%
-227
- C4 -
-
5WSN
-
?
D:
[27-61]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
Y
L
M
K
T
-
E
N
W
I
IR-----------
N
---
P
G
Y
A
F
L
A
A
V
L
G
W
M
L
G
S
N
N
G
Q
R
V
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
HHSearch
29.96
14%
-181
- C5 -
-
2YXY
-
?
A:
[80-93]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
K
G
V
F
A
W
G
W
R
L
K
G
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------