@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0257: (2017-12-18 )
MTWFEEIFEEYKFEKGEGQCPRLLCFLVASFVKRVIIDCRIKGGIYERDSRIIY
Atome Classification :
(20 SA)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....--....10--.........20-........30......---..40--.-.......50--....------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
T
W
F
E
--
E
I
F
E
E---YKFEKGEGQ
C
P
-
R
L
L
C
F
L
V
A
S
F
V
K
R
V
I
I
---
D
C
R
I--K-G
G
I
Y
ERDS---RIIY------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
68.65
42%
137
* C6 *
-
4ZLA
1
AMPA_HELPY
A:
[7-502]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
L
K
I
K
L
E
KTTFENAKAE
C
S
L
V
F
I
I
NKDFS
H
A
W
V
K
N
K
E
L
L
E
T
---
F
K
Y
E
-
G
E
G
-----------------
V
F
L
---
D
------------
Q
E
N
---
K
I
L
Y
A
G
V
KEDD
V
H
L
L
R
E
S
A
C
L
A
V
R
T
L
K
K
LAFK
S
V
K
V
G
V
Y
T
C
GAHN
A
L
L
E
N
L
K
A
L
F
L
G
L
K
L
GLYEYDTFKSN
K
K
E
S
VLK
E
A
I
V
A
LELHKS
L
E
K
S
A
K
E
A
L
K
Y
A
E
I
M
T
E
S
L
N
I
V
K
D
L
V
N
TPPMIGT
P
V
Y
M
A
E
V
A
Q
K
V
A
K
E
N
H
L
E
I
H
V
H
D
E
K
F
L
E
E
K
KM
N
A
F
L
A
V
N
KASLSV
N
P
P
R
L
I
H
L
V
Y
K
P
KKAK
K
K
I
A
L
V
G
K
GLTYDCGGLSLKPADYMVTMKADK
G
G
G
S
A
V
I
G
L
L
N
A
L
A
K
L
GVEAE
V
H
G
I
I
GATENMIGPAAYKPD
D
I
L
I
S
KEG
K
S
I
E
V
RNTDAE
G
R
L
V
L
A
D
C
L
S
Y
A
Q
D
L
NPD
V
I
V
D
F
A
TLT
G
A
C
V
V
G
LGEF
T
S
A
I
M
G
H
N
E
E
L
K
N
L
F
E
T
S
G
L
E
S
G
E
L
L
A
K
L
P
F
N
R
H
L
K
K
L
I
ESKIADVCNISSSRYG
G
A
I
T
A
G
L
F
L
N
E
F
IRDEFKDK
W
L
H
I
D
IAGPAYVEKEWDVNSFGASGAG
V
R
A
C
T
A
F
V
E
E
L
L
K
K
A
2
HHSearch
63.56
30%
-284
- C6 -
-
1QLM
-
MCH_METKA
A:
[265-294]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
M
--
K
I
F
E
E
---
A
D
Y
D
F
-
Y
K
I
D
P
-
G
V
--
F
A
P
A
R
V
V
V
N
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
57.23
27%
-282
- C6 -
-
4GVQ
-
MCH_ARCFU
C:
[261-290]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Y
--
E
I
F
K
A
---
A
N
Y
D
F
-
Y
K
I
D
P
-
N
L
--
F
A
P
A
Q
I
A
V
N
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
56.30
20%
-262
- C6 -
-
4FIO
1
?
A:
[302-331]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
--
D
V
F
K
D
---
A
G
F
D
F
-
Y
Q
I
D
K
-
G
M
--
F
A
P
A
E
V
V
I
N
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
53.24
20%
-225
- C6 -
-
4FIO
-
?
C:
[302-331]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
F
--
D
V
F
K
D
---
A
G
F
D
F
-
Y
Q
I
D
K
-
G
M
--
F
A
P
A
E
V
V
I
N
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
51.63
27%
0
- C- -
-
2YBB
-
UCRI_BOVIN
E:
[136-172]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
V
C
T
-
H
L
G
C
V
P
I
A
N
A
G
D
F
G
G
Y
---
Y
C
P
C
--
H
-
G
S
H
Y
D
A
S
G
---
R
I
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
51.63
27%
0
- C- -
-
1PP9
-
?
E:
[136-172]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
V
C
T
-
H
L
G
C
V
P
I
A
N
A
G
D
F
G
G
Y
---
Y
C
P
C
--
H
-
G
S
H
Y
D
A
S
G
---
R
I
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
48.06
42%
-288
- C6 -
-
5T58
-
?
B:
[77-94]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
--
A
I
F
H
E
---
R
S
I
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
47.52
42%
-254
- C6 -
-
5T51
-
?
B:
[77-88]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
--
A
I
F
H
E
---
R
S
I
E
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
45.83
27%
-211
- C6 -
-
4GVS
-
MCH_ARCFU
A:
[261-290]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
Y
--
E
I
F
K
A
---
A
N
Y
D
F
-
Y
K
I
D
P
-
N
L
--
F
A
P
A
Q
I
A
V
N
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
42.55
24%
97
- C7 -
-
3AHC
13
?
A:
[25-826]
VIGTPWQKLDRPVS
E
E
A
I
E
G
M
D
K
Y
W
R
V
T
N
Y
M
S
I
G
Q
I
YLRSNPLMKEPFTRDDVKH
R
L
V
G
H
WGT
T
P
G
L
N
F
L
L
A
H
I
N
R
L
I
A
D
H
QQN
T
V
F
I
MGPGHG
G
P
A
G
T
S
Q
S
Y
V
D
G
T
Y
T
E
Y
Y
PNITKD
E
A
G
L
Q
K
F
F
R
Q
FSYPGGIPSHFAPETPGSIHEGGELGY
A
L
S
H
A
Y
G
A
V
MNNPS
L
F
V
P
C
I
I
G
D
G
E
A
E
T
G
P
L
A
T
G
W
Q
SNKLVNPRT
D
G
I
V
L
P
I
L
HLNGYKIANPTILARIS
D
E
E
L
H
D
F
F
R
G
M
GYH
P
Y
E
F
V
A
GFDNED
H
M
S
I
H
R
R
F
A
E
L
F
E
T
I
F
D
E
I
C
D
I
K
A
A
A
Q
T
DDMTRPF
Y
P
M
L
I
F
R
T
P
KGWTCPKFIDGKKTEGSWRAHQVPLASARDT
E
E
H
F
E
V
L
K
G
W
M
E
S
Y
K
P
E
E
L
F
NADGSIKDDVTAFMPKGELRIGANPNANGGVIREDLKLPELDQYEVTGVKEYGHGWGQVE
A
P
R
A
L
G
A
Y
C
R
D
I
I
K
N
N
PDS
F
R
I
F
G
PDETASNRLNATYEVTDKQWDNGYLSGLVDEHMAVTGQ
V
T
E
Q
LS
E
H
Q
C
E
G
F
L
E
A
Y
L
L
T
G
R
H
G
I
W
S
S
YESFVHVI
D
S
M
L
N
Q
H
A
K
W
L
E
--
A
T
V
R
E
---
I
P
W
R
K
P
----
I
-
S
S
V
N
L
L
V
S
S
H
V
W
R
--------
Q
D
--
H
-
N
G
F
S
H
Q
D
P
---
G
V
T
S
L
L
I
N
K
TFNNDHV
T
N
I
Y
F
ATD
A
N
M
L
L
A
I
S
E
K
C
F
K
STN
K
I
N
A
I
F
A
G
K
Q
P
A
P
T
W
V
T
L
D
E
A
R
A
E
L
E
A
GAAEWKWASNAENNDEVQ
V
V
L
A
S
A
G
D
V
P
T
Q
E
L
M
A
A
S
D
A
L
N
K
M
G
I
K
F
K
V
V
N
V
V
DLLKLQSRENNDEALT
D
E
E
F
T
E
L
FTAD
K
P
V
L
F
A
Y
HSY
A
Q
D
V
R
G
L
I
Y
DRPNHDN
F
H
V
V
G
YKEQGSTTT
P
F
D
M
V
R
V
N
DMD
R
Y
A
L
Q
A
A
A
L
K
L
I
DADKY
A
D
K
I
D
E
L
N
A
F
R
K
K
A
F
Q
F
A
V
D
NGYDI
P
E
F
T
D
WVYPDV------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
40.07
22%
-39
* C7 *
-
5HGZ
3
NAA60_HUMAN
A:
[2-212]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MT
E
E
E
R
S
S
A
L
S
E
V
S
L
R
L
L
C
HDD
I
D
T
V
K
H
L
C
G
D
W
F
P
I
E
Y
P
D
S
W
Y
R
--
D
I
T
S
N
---
K
K
F
F
S
L
A
A
T
Y
R
G
A
I
V
G
M
I
V
A
E
I
K
N
R
T
K
I
HKE
D
G
D
I
--
L
-
A
S
N
F
S
V
D
T
---
Q
V
A
Y
I
L
S
L
G
V
VKEFRKHG
I
G
S
L
L
L
E
S
L
K
D
H
I
S
T
T
AQDHCK
A
I
Y
L
H
V
L
TTN
N
T
A
I
N
F
Y
E
N
R
D
F
K
Q
H
H
YLPYYYSIRG
V
L
K
D
G
F
T
Y
V
L
Y
I
NGGHPPWT
I
L
D
Y
I
Q
H
L
G
S
A
L
ASLSPCSIPH------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
24
Fugue
39.98
20%
56
- C4 -
-
1AFP
-
AFP_ASPGI
A:
[1-51]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
T
Y
N
G
--
K
C
Y
K
K
DN
I
C
K
Y
K
A
Q
S
G
K
T
A
-
I
C
K
C
Y
---------
V
K
---
K
C
P
R
--
D
-
G
A
K
C
E
F
D
S
YKG
K
C
Y
C
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
38.00
27%
-15
- C6 -
-
4US3
11
?
A:
[10-450]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GREQWASRL
G
F
I
L
A
A
M
G
S
A
VGLGNI
W
R
F
S
Y
V
T
G
E
N
GG
A
A
F
L
L
V
Y
L
G
F
I
A
LI
G
I
P
I
V
L
A
E
F
T
I
G
R
R
A
QSD
A
V
G
S
F
E
K
L
APGKPWK
V
A
G
L
M
G
V
A
A
G
F
L
I
L
S
F
Y
G
V
I
A
G
W
I
L
F
Y
L
F
N
Y
I
T
GQLWSAPAEG
F
G
G
F
F
E
--
G
F
I
A
N
-------------
P
-
T
L
P
L
F
W
Q
A
L
F
M
I
A
T
I
W
---
I
V
A
I
GV
K
-
K
G
I
E
R
S
N
K
---
I
L
M
P
L
L
G
V
L
L
I
A
L
A
I
Y
S
L
T
LGG
A
K
E
G
L
A
F
L
FSPDWSALKD
P
G
V
Y
L
A
A
I
S
Q
A
F
F
T
L
SLGMG
A
L
I
T
Y
G
S
Y
VSKDSR
L
P
G
A
A
V
S
V
A
G
L
D
T
A
F
A
I
I
A
G
I
M
I
F
P
A
V
F
A
L
GLSPSGGPG
L
V
F
V
V
L
P
D
I
F
D
S
IRL
G
P
I
V
G
I
A
F
F
I
L
L
G
A
A
A
L
S
S
A
V
S
L
L
E
V
P
V
A
Y
F
M
R
K
F
DWS
R
K
Q
A
A
I
T
L
G
V
I
I
T
L
L
G
I
P
S
S
L
S
F
GVLGEVTIIPGLN
I
F
D
S
V
D
F
I
A
SSV
F
L
P
L
G
G
M
I
I
A
L
F
I
G
WGWK
T
S
D
A
L
A
E
S
DLTDS
V
W
G
K
L
W
I
L
S
L
R
F
I
A
P
I
A
I
L
I
V
F
L
S
A
F---------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
37.42
41%
-38
- C6 -
-
2K1O
-
?
B:
[47-73]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
V
N
S
F
V
K
R
H
I
L
---
K
T
I
I
--
Y
-
K
K
G
T
N
Q
D
S
---
S
I
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
37.01
33%
-149
- C6 -
-
5LSJ
-
PMF1_HUMAN
E:
[63-74]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
S
--
D
I
K
E
E
---
G
N
L
E
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
34.23
32%
-48
- C6 -
-
1JWH
-
CSK2B_HUMAN
D:
[95-116]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
Q
M
L
E
K
---
Y
Q
Q
G
D
-
F
G
Y
C
P
-
R
V
Y
C
E
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
31.99
55%
-
- C3 -
-
2QFA
-
INCE_HUMAN
C:
[31-41]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
V
W
L
E
--
E
I
Q
E
E
---
A
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
31.03
57%
-
- C- -
-
4EQA
-
?
D:
[77-91]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
---
D
C
R
I
--
E
D
G
G
I
W
S
R
G
G
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
30.87
32%
-32
- C6 -
-
1QF8
-
CSK2B_HUMAN
B:
[95-116]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
Q
M
L
E
K
---
Y
Q
Q
G
D
-
F
G
Y
C
P
-
R
V
Y
C
E
N
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------