@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0326: (2017-12-20 )
MSLLETAKRHQLNSEKYLSYLLECLPNEETLVNKEVLEAYLPWTKVVQEKCK
Atome Classification :
(20 SA)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-----.....--...-----.20....----.-----...30------........40..--....---..50.-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------MSLLETAKRH------QLNSE--KYL-----SYLLECL----P-----NEETL------VNKEVLEAYLPW--TKVV---QEKCK-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
64.75
17%
72
- C6 -
-
2MH3
-
HES1_HUMAN
A:
[26-95]
--------------------------------------------------------------------------------------------------------------------------------------------------------------MKPKTASEHRKSS
K
P
I
M
E
K
R
R
R
A
------
R
I
N
E
S
L
S
Q
L
K
-----
T
L
I
L
D
A
L
KKDS
S
-----
R
H
S
K
L
------
E
K
A
D
I
L
E
M
T
V
K
H
--
L
R
N
L
---
Q
R
A
Q
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
HHSearch
60.34
42%
-220
- C6 -
-
2K5E
-
?
A:
[43-61]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
Q
G
A
N
A
H
------
G
L
N
V
E
--
D
I
L
-----
R
D
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
60.24
23%
68
* C6 *
-
5H11
-
?
A:
[1-509]
GPLGSQ
L
I
Q
E
F
T
A
A
Q
R
RGEIG
R
M
R
E
V
A
A
V
L
L
H
F
KG
Y
A
H
C
V
D
V
Y
I
K
Q
C
Q
E
G
A
YMRND
V
F
E
D
I
A
I
L
C
Q
R
V
N
K
Q
V
G
E
V
FCS
P
E
T
V
M
A
K
L
I
Q
S
I
F
E
N
K
I
Q
A
H
V
K
E
R
L
D
E
T
R
NSD
V
E
Q
Y
L
K
N
L
Y
D
L
Y
T
R
T
T
A
L
A
A
K
L
T
D
YNLGSD
K
H
T
F
L
S
K
L
I
K
N
I
F
S
C
Y
L
E
S
Y
I
D
M
E
R
Q
Y
L
Q
N
R
S
G
M
I
L
Q
R
Y
Y
D
------
S
K
N
H
Q
--
K
R
I
-----
D
----------
T
-----
H
G
E
T
L
------
L
S
Q
E
V
V
V
N
L
L
Q
E
--
T
R
H
A
---
F
E
R
C
N
K
LSDPAD
L
P
K
N
A
F
S
I
F
L
I
L
V
E
Y
LCVDH
I
D
Y
A
L
E
I
G
L
S
A
IPSADAKNANL
Y
F
L
D
V
V
Q
Q
A
N
T
I
F
H
L
F
D
K
Q
F
N
D
H
L
M
P
L
I
S
SSPK
L
T
E
C
L
H
K
K
K
E
V
I
E
Q
M
E
V
K
L
D
T
G
I
D
R
T
L
N
C
M
I
G
Q
M
K
Y
I
L
T
T
E
QKKTDFKPEDEN
N
V
M
I
Q
YT
T
A
C
S
K
V
C
A
Y
V
G
K
Q
V
E
R
V
R
R
S
M
DG
K
N
V
D
T
V
L
T
E
L
G
V
R
F
H
R
L
I
H
E
H
L
Q
Q
F
SYS
S
M
G
G
M
L
A
I
C
D
V
A
E
Y
R
R
S
A
K
D
F
RV
P
L
V
L
Q
L
F
D
T
L
H
A
L
C
NLLVVAPDN
L
K
Q
V
C
S
GEQLTNLD
R
N
L
L
H
A
F
V
Q
L
RVDYRSARLGRHFS
9
HHSearch
56.01
21%
-202
- C6 -
-
2K53
-
?
A:
[40-63]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
I
E
D
A
C
A
V
H
------
G
I
D
A
D
--
K
L
V
-----
K
E
L
N
E
Y
F
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
55.89
25%
-134
- C6 -
-
2FI0
-
?
A:
[51-70]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
K
Q
G
S
K
L
A
------
G
T
P
M
D
--
K
I
V
-----
R
T
L
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
53.23
24%
-70
- C6 -
-
3G36
-
DPY30_HUMAN
C:
[25-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
V
L
A
K
E
R
------
P
P
N
P
I
--
E
F
L
-----
A
S
Y
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
53.10
24%
-65
- C6 -
-
3G36
1
DPY30_HUMAN
A:
[25-45]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
V
L
A
K
E
R
------
P
P
N
P
I
--
E
F
L
-----
A
S
Y
L
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
52.17
19%
63
- C6 -
-
2I9F
2
NCAP_EAVBU
A:
[6-64]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
H
H
E
P
G
D
L
R
H
------
D
L
N
Q
Q
--
E
R
A
-----
T
L
S
S
N
V
Q
----
R
F
F
M
I
G
H
G
S
L
T
------
A
D
A
G
G
L
T
Y
T
V
S
W
V
P
T
K
Q
I
---
Q
R
K
V
A
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
51.39
22%
-117
- C6 -
-
1B0N
-
SINI_BACSU
B:
[17-34]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
L
M
V
E
A
K
E
A
------
N
I
S
P
E
--
E
I
R
-----
K
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
50.44
26%
92
- C3 -
-
1UOY
-
BUBL_PENBR
A:
[1-64]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------DTC
G
S
G
Y
N
V
D
Q
R
R
TNSGCK
A
G
N
G
D
--
R
H
F
C
G
CDR
T
G
V
V
E
C
K
----
G
-----
G
--------------------
K
W
--
T
E
V
Q
DCG
S
S
S
C
K
G
T
SNGGATC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
49.79
25%
-70
- C2 -
-
1V5A
-
?
A:
[1-28]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
C
L
----
P
-----
S
G
K
A
C
------
A
G
V
T
---
Q
K
I
P
C
C-
G
S
C
V
---
R
G
K
C
S
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
48.40
15%
49
* C5 *
-
2E1F
-
A:
[3-96]
--------------------------------------------------------------------------------------------------------------------------------------------------QPVIS
A
Q
E
Q
E
T
Q
I
V
L
Y
G
K
L
V
E
A
R
Q
K
H
A
N
K
M
D
V
P
P
A
------
I
L
A
T
N
--
K
I
L
-----
V
D
M
A
K
M
R
----
P
-----
T
T
V
E
N
V
K
R
IDG
V
S
E
G
K
A
A
M
L
A
P
L
--
L
E
V
I
---
K
H
F
C
Q
T
N
SVQTDLFSS--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
47.89
23%
-
- C6 -
-
2X3M
-
?
A:
[180-205]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
I
A
E
A
K
A
K
------
G
E
N
P
E
--
V
V
A
-----
R
E
I
A
E
A
V
----
P
-----
R
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
47.78
26%
-138
- C6 -
-
2CPG
-
COPG_STRAG
A:
[21-39]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
E
M
------
G
L
S
K
S
--
A
M
I
-----
S
V
A
L
E
N
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
43.03
26%
-175
- C6 -
-
1EA4
1
COPG_STRAG
F:
[21-39]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
E
M
------
G
L
S
K
S
--
A
M
I
-----
S
V
A
L
E
N
Y
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
42.13
20%
-70
- C6 -
-
2MDV
-
?
B:
[19-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
R
R
E
------
G
L
S
K
S
--
E
M
I
-----
N
V
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
HHSearch
42.01
12%
-175
- C6 -
-
2GTA
-
YPJD_BACSU
A:
[73-97]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
L
V
C
L
A
N
S
L
------
D
I
S
L
E
--
E
A
H
-----
D
R
V
M
H
K
F
----
N
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
HHSearch
41.99
11%
-117
- C6 -
-
2YAL
-
SINR_BACSU
A:
[10-27]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
L
V
R
D
A
M
T
S
------
G
V
S
K
K
--
Q
F
R
-----
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
40.38
21%
-13
- C6 -
-
2BA3
-
?
A:
[34-47]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
D
S
------
G
L
T
V
S
--
A
Y
I
-----
R
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
39.73
13%
-98
- C6 -
-
2K29
-
RELB_ECOLI
A:
[18-40]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
A
L
E
K
M
------
G
V
T
P
S
--
E
A
L
-----
R
L
M
L
E
Y
I
----
A
-----
D
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------