@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr0886: (2017-12-31 )
MYMNYTPKVRQKKSNFWGVFIMKLTYDDKVQIYELRKQGYSLEKLSNKFGINNSNLRYMIKLIDR
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.....-..-------..10........20........30.----..-....--.--------40--.-.--.....-..50.....----...60....-----------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MYMNY-TP-------
K
V
R
Q
KKSNF
W
G
V
F
I
M
K
LTYDDK
V
Q
I
----
Y
E
-
L
R
K
Q--G--------Y---
S
-
L
--
E
K
L
S
N
-KFGINNSN
L
----
R
Y
M
I
K
LIDR-----------------------------------------
13
HHSearch
66.68
16%
-199
- C3 -
-
6PAX
-
PAX6_HUMAN
A:
[15-58]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
P
L
P
D
S
T
R
Q
R
I
----
V
E
-
L
A
H
S
--
G
--------
A
---
R
-
P
--
C
D
I
S
R
-
I
L
Q
V
S
N
G
C
V
----
S
K
I
L
G
R
Y
Y
------------------------------------------
12
HHSearch
66.56
17%
-227
- C- -
-
1K78
-
PAX5_HUMAN
A:
[28-73]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
G
R
P
L
P
D
V
V
R
Q
R
I
----
V
E
-
L
A
H
Q
--
G
--------
V
---
R
-
P
--
C
D
I
S
R
-
Q
L
R
V
S
H
G
C
V
----
S
K
I
L
G
R
Y
Y
------------------------------------------
23
HHSearch
64.36
19%
-135
- C3 -
-
1TC3
2
TC3A_CAEEL
C:
[4-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
A
L
S
D
T
E
R
A
Q
L
----
D
V
-
M
K
L
L
--
N
--------
V
---
S
-
L
--
H
E
M
S
R
-
K
I
S
R
S
R
H
C
I
----
R
V
Y
L
K
D
P
V
------------------------------------------
14
HHSearch
62.10
26%
-104
- C3 -
-
2ELH
-
DAN_DROME
A:
[18-63]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
P
L
R
S
L
T
P
R
D
K
I
H
A
----
I
Q
-
R
I
H
D
--
G
--------
E
---
S
-
K
--
A
S
V
A
R
-
D
I
G
V
P
E
S
T
L
----
R
G
W
C
K
N
E
D
------------------------------------------
11
HHSearch
61.58
11%
-217
- C3 -
-
1PDN
2
PRD_DROME
C:
[12-58]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
N
G
R
P
L
P
N
N
I
R
L
K
I
----
V
E
-
M
A
A
D
--
G
--------
I
---
R
-
P
--
C
V
I
S
R
-
Q
L
R
V
S
H
G
C
V
----
S
K
I
L
N
R
Y
Q
------------------------------------------
25
Fugue
57.37
20%
-129
* C3 *
-
2X48
-
Y56_SIRV1
A:
[1-54]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
K
-------
K
E
I
Q
V
Q
G
---
V
R
Y
Y
V
E
S
E
D
D
L
V
S
V
A
----
H
E
-
L
A
K
M
--
G
--------
Y
---
T
-
V
--
Q
Q
I
A
N
-
A
L
G
V
S
---
E
----
R
K
V
R
R
Y
L
E
S
-----------------------------------------
17
HHSearch
55.97
20%
-194
- C3 -
-
2M8E
-
?
A:
[4-49]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
K
S
K
E
I
S
Q
D
L
R
K
K
I
----
V
D
-
L
H
K
S
--
G
--------
S
---
S
-
L
--
G
A
I
S
K
-
R
L
K
V
P
R
S
S
V
----
Q
T
I
V
R
K
Y
K
------------------------------------------
31
Fugue
55.54
33%
107
- C2 -
-
5KDS
10
?
A:
[20-530]
HMASVLELEMRGD
S
I
S
E
A
K
K
R
KVWN
F
Q
D
W
Q
I
T
G
L
S
A
R
AG
D
K
I
T
V
Y
V
D
V
AEG
D
P
T
P
T
L
L
Y
K
Q
S
LTQHG
G
A
T
S
F
Q
L
K
P
G
K
N
E
I
T
I
P
E
I
NYESNGIPKDVIQ
G
G
D
L
F
F
T
NYKSDSQK
R
A
P
K
V
R
I
E
G
A
S
K
Y
P
V
F
I
L
GKSD
E
N
E
V
M
K
E
L
E
A
Y
V
E
K
I
K
A
E
PKTTPN
I
F
A
V
S
S
NK
S
L
E
F
V
Q
A
T
Y
A
L
D
W
Y
K
K
N
NKTP
K
Y
T
A
E
Q
W
D
Q
Y
I
A
D
A
M
G
F
W
GFDNSKDVN
S
D
F
N
F
R
I
M
PMVKNLSGGAFMNAGNG
V
I
G
I
R
PGN
Q
D
A
I
L
A
ANKG
W
G
V
A
H
E
L
G
H
N
F
DTGGRTIVEVTNN
M
M
P
L
F
F
E
S
K
YKTKT
R
I
T
D
Q
NIWENNTYPKVGLDDYSNNELYNKADSTHLAQL
A
P
L
W
Q
L
Y
L
Y
DNT
F
Y
G
K
F
E
R
Q
F
R
E
R
DFGNKN
R
E
D
I
Y
K
S
W
V
V
A
A
S
D
A
M
ELDL
T
E
F
F
A
R
H
G
I
R
V
D
D
K
V
K
E
D
L
AKYPKPDKKIYYLND
L
A
M
N
Y
-
K
G
DGFTEN
A
K
V
S
V
S
T
S
G
S
N
G
N
I
K
L
S
F
S
V
D
D
E
N
K
D
NIL
G
Y
E
-
I
R
R
D
--
G
--------
K
---
Y
-
V
--
G
F
T
S
N
D
S
F
V
D
T
K
S
N
L
DED
G
V
Y
V
V
T
P
Y
D
R
KLNTLN
P
I
E
V
N------------------------------
16
HHSearch
55.34
18%
23
- C3 -
-
2COB
-
A:
[11-55]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
R
Q
Y
N
S
E
I
L
E
E
A
----
I
S
-
V
V
M
S
G-
K
--------
M
---
S
-
V
--
S
K
A
Q
S
-
I
Y
G
I
P
H
S
T
L
----
E
Y
K
V
K
E
R
L
------------------------------------------
9
HHSearch
54.68
20%
93
- C3 -
-
1HLV
-
CENPB_HUMAN
A:
[4-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
R
Q
L
T
F
R
E
K
S
R
I
----
I
Q
-
E
V
E
E
N
P
D
--------
L
---
R
-
K
--
G
E
I
A
R
-
R
F
N
I
P
P
S
T
L
----
S
T
I
L
K
N
K
R
------------------------------------------
7
HHSearch
52.17
24%
34
- C3 -
-
2JN6
-
?
A:
[2-48]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
T
K
T
Y
S
E
E
F
K
R
D
A
----
V
A
-
L
Y
E
N
SD
G
--------
A
---
S
-
L
--
Q
Q
I
A
N
-
D
L
G
I
N
R
V
T
L
----
K
N
W
I
I
K
Y
G
------------------------------------------
15
HHSearch
51.47
13%
-187
- C3 -
-
2K27
-
PAX8_HUMAN
A:
[22-66]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
G
R
P
L
P
E
V
V
R
Q
R
I
----
V
D
-
L
A
H
Q
--
G
--------
V
---
R
-
P
--
C
D
I
S
R
-
Q
L
R
V
S
H
G
C
V
----
S
K
I
L
G
R
Y
Y
------------------------------------------
24
HHSearch
49.86
28%
75
- C3 -
-
2M8G
-
?
X:
[455-491]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
K
R
I
----
I
E
-
A
L
E
K
T-
G
--------
Y
---
V
-
K
--
S
R
A
A
K
-
L
L
G
Y
T
L
R
Q
L
----
D
Y
R
I
K
K
Y
G
------------------------------------------
29
Fugue
49.16
28%
139
- C3 -
-
1BW6
-
CENPB_HUMAN
A:
[1-56]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
G
P
-------
K
R
R
Q
------------
L
T
F
R
E
K
S
R
I
----
I
Q
-
E
V
E
E
--
N
--------
P
---
D
-
L
R
K
G
E
I
A
R
-
R
F
N
I
P
P
S
T
L
----
S
T
I
L
K
N
K
R
A
ILASE------------------------------------
21
HHSearch
47.99
13%
76
- C3 -
-
2LVS
-
?
A:
[4-43]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
N
D
S
L
D
I
----
V
E
-
K
L
Y
K
D
-
G
--------
V
---
P
-
V
--
K
E
I
A
K
-
R
S
N
N
S
M
S
T
V
----
Y
K
A
L
E
K
L
E
------------------------------------------
10
HHSearch
47.65
14%
9
- C3 -
-
2GLO
2
?
A:
[3-50]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
R
I
F
T
P
H
F
K
L
Q
V
----
L
E
-
S
Y
R
N
--
D
N-------
D
CKG
N
-
Q
--
R
A
T
A
R
-
K
Y
N
I
H
R
R
Q
I
----
Q
K
W
L
Q
C
E
S
------------------------------------------
8
HHSearch
47.37
9%
7
- C3 -
-
2RN7
-
?
A:
[1-55]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
K
N
T
R
F
S
P
E
V
R
Q
R
A
----
V
R
-
M
V
L
E
--
S
Q
G
E
Y
DS
Q
W
A
---
T
-
I
--
C
S
I
A
P
-
K
I
G
C
T
P
E
T
L
----
R
V
W
V
R
Q
H
E
------------------------------------------
1
PsiBlast_PDB
47.20
34%
67
- C3 -
-
2X48
-
Y56_SIRV1
A:
[18-49]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
D
L
V
S
V
A
---
H
E
-
L
A
K
M
--
G
--------
Y
---
T
-
V
--
Q
Q
I
A
N
-
A
L
G
V
S
E
R
K
V
----
R
-------------------------------------------------
30
Fugue
46.15
33%
43
- C3 -
-
4Q3K
1
?
A:
[20-260]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------Q
G
M
N
I
S
K
I
T
INQHVG
V
T
L
T
C
Y
V
Q
DVSQEMSNMS
K
R
P
A
M
L
I
F
P
G
G
GYQFCSDREA
E
P
I
A
L
S
Y
L
A
K
G
Y
N
A
F
V
L
RYSVKEHAVFP
R
P
L
I
D
A
E
D
A
L
S
Y
L
K
D
N
AHALHINPDK
I
A
V
I
G
F
S
A
G
G
H
L
A
T
T
L
A
T
EGKVRPN
A
V
V
L
G
YPALIRHE
K
Y
W
N
F
P
T
P
-------
K
V
D
Q
Q
T
P
E
---
M
F
V
F
H
T
F
E
D
D
L
V
P
--------
L
S
H
P
--
L
--------
Y
---
I
-
V
--
E
E
L
S
K
-------
A
N
I
----
P
V
E
F
H
L
F
K
S
GVHGLSLGNKIVSNGLDKMIEDDVQV
W
F
D
L
S
C
R
W
L
D
K
V
L
DL
4
PsiBlast_PDB
42.27
43%
87
- C3 -
-
5HG0
-
PANC_FRATT
A:
[204-240]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
I
----
Y
E
I
L
R
Q
D
--
D
--------
F
---
S
N
L
--
E
E
L
T
N
-
K
I
N
S
T
G
A
K
L
----
Q
Y
I
Q
K
L
N
N
R
-----------------------------------------