@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1088: (2018-01-04 )
MSKQKKFEENLAELETIVQSLENGEIALEDAITAFQKGMVLSKELQATLDKAEKTLVKVMQEDGTESDFE
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------..-.......10........20-....---..-..30.....-...40..---...----...50..-----..-----....60..-......70----------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS-
K
Q
K
K
F
E
E
N
L
A
E
L
E
T
I
V
Q
S
L-ENG
E
---
I
A
-
L
E
D
A
I
T
A
F
Q
-KG
M
V
L
S
K
---
E
L
Q
----
A
T
L
D
K
A
E
-----
K
T
-----
L
V
K
V
M
Q
ED-GTESDFE-----------------------------------------
1
PsiBlast_PDB
82.85
42%
-147
- C2 -
-
1VP7
-
EX7S_BORPE
A:
[20-75]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
E
T
A
L
A
E
L
E
S
L
V
S
A
M
-
E
N
G
T
---
L
P
-
L
E
Q
S
L
S
A
Y
R
-
R
G
V
E
L
A
R
---
V
C
Q
----
D
R
L
A
Q
A
E
-----
Q
Q
------
V
K
V
L
E
G
D
-------------------------------------------------
22
HHSearch
70.67
32%
-88
- C2 -
-
1VP7
-
EX7S_BORPE
B:
[15-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-
L
P
Q
D
F
E
T
A
L
A
E
L
E
S
L
V
S
A
M
-
E
N
G
T
---
L
P
-
L
E
Q
S
L
S
A
Y
R
-
R
G
V
E
L
A
R
---
V
C
Q
----
D
R
L
A
Q
A
E
-----
Q
Q
-----
V
K
V
L
E
G
D
L
-------------------------------------------------
23
HHSearch
65.24
32%
-66
- C2 -
-
1VP7
-
EX7S_BORPE
C:
[15-76]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
-
L
P
Q
D
F
E
T
A
L
A
E
L
E
S
L
V
S
A
M
-
E
N
G
T
---
L
P
-
L
E
Q
S
L
S
A
Y
R
-
R
G
V
E
L
A
R
---
V
C
Q
----
D
R
L
A
Q
A
E
-----
Q
Q
-----
V
K
V
L
E
G
D
L
-------------------------------------------------
43
Fugue
63.34
25%
-37
- C2 -
-
2A3D
-
?
A:
[1-73]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
G
-
S
W
A
E
F
K
Q
R
L
A
A
I
K
T
R
L
Q
A
L
-
G
G
S
E
AEL
A
A
-
F
E
K
E
I
A
A
F
E
-
S
E
L
Q
A
Y
K
---
G
K
G
NPEV
E
A
L
R
K
E
A
-----
A
A
-----
I
R
D
E
L
Q
A
Y
-
R
H
N
---------------------------------------------
49
Fugue
62.43
25%
-5
- C2 -
-
2HG4
-
ERYA3_SACER
A:
[9-901]
EE
K
L
R
R
Y
L
K
R
T
V
T
E
L
D
S
V
T
A
R
L
R
E
V
E
H
R
A
G
EPIAIV
G
M
A
C
R
F
P
GDVDS
P
E
S
F
W
E
F
V
S
G
GGDAIAEAPADRGWEPDP
D
A
R
L
G
GMLAAAGDFDAGFFGIS
P
R
E
A
L
A
MD
P
Q
Q
R
I
M
L
E
I
S
W
E
A
L
E
R
A
GHDPVSLRGSA
T
G
V
F
T
G
V
G
T
VDYGPRPDEAPDEVLGY
V
G
T
G
T
A
S
S
V
A
S
G
R
V
A
Y
C
L
GLE
G
P
A
M
T
V
D
TACS
S
G
L
T
A
L
H
L
A
M
E
S
L
R
R
DECG
L
A
L
A
G
G
V
T
V
MSSP
G
A
F
T
E
F
R
S
Q
GGLAADGRCKPFSKAAD
G
F
G
L
A
E
G
A
G
V
L
VLQR
L
S
A
A
R
R
E
GRPVLAVLR
G
S
A
V
N
Q
DGASNGLTAPS
G
P
A
Q
Q
R
V
I
R
R
A
L
E
N
A
GVRAGDVDYVEAHGTGTRLG
D
P
I
E
V
H
A
L
L
S
T
YGAERDPD
D
P
L
W
I
G
S
VKSNIGHTQAA
A
G
V
A
G
V
M
K
A
V
L
A
L
R
H
GEMPRTLHFDEPSPQIEWAVSVVS
Q
A
R
S
W
P
AGERP
R
R
A
G
V
S
S
F
G
ISG
T
N
A
H
V
I
V
E
E
A
PEADG
P
V
P
L
V
L
SGRD
E
Q
A
M
R
A
Q
A
G
R
L
A
D
H
L
A
R
E
PRNS
L
R
D
T
G
F
T
L
A
TR
R
S
A
W
E
H
R
A
V
V
V
G
D
R
D
E
A
L
A
G
L
R
A
V
A
D
G
R
I
A
D
R
T
A
T
G
Q
A
R
TRR
G
V
A
M
V
F
P
G
Q
GAQWQGMA
R
D
L
L
R
E
S
Q
V
F
A
D
S
I
R
D
C
E
R
A
L
A
PHVDWS
L
T
D
L
L
S
G
ARPLDR
V
D
V
V
Q
P
A
L
F
A
V
M
V
S
L
A
A
L
W
R
S
H
GVEPA
A
V
V
G
H
S
Q
G
E
I
A
A
A
H
V
A
GALT
L
E
D
A
A
K
L
V
A
V
R
S
R
V
L
RRLGGQ
G
G
M
A
S
F
GLG
T
E
Q
A
A
E
R
I
GRFAGALSIASVNGPR
S
V
V
V
A
GES
G
P
L
D
E
L
I
A
E
C
E
A
E
AHK
A
R
R
I
PVDYASHSPQVESL
R
E
E
L
L
T
E
LAG
I
S
P
V
SADVALYSTTTGQPIDT
A
T
M
D
T
A
Y
W
Y
A
N
L
R
E
Q
V
R
F
Q
D
A
T
-
R
Q
L
A
---
E
A
-
G
F
D
A
F
V
E
V
S
-
P
H
P
V
L
T
V
---
G
I
E
----
A
T
L
D
S
A
L
PADA
G
A
C
-----
V
V
G
T
L
R
R
D
R
G
G
L
A
D
F
H
T
A
L
G
E
A
Y
A
Q
GVEVDWSPAFAD
A
R
P
V
E
L
P
V
Y
PFQ
R
Q
R
Y
W
L
P
I
47
Fugue
62.37
20%
-185
- C2 -
-
1UFI
-
CENPB_HUMAN
A:
[3-50]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
-
P
V
P
S
F
G
E
A
M
A
Y
F
A
M
V
K
R
Y
L
-
T
S
F
P
---
I
-----------------
D
D
---
R
V
Q
----
S
H
I
L
H
L
E
-----
H
D
-----
L
V
H
V
T
R
K
N
-------------------------------------------------
6
PsiBlast_PDB
62.34
42%
-24
- C2 -
-
1KXP
-
VTDB_HUMAN
D:
[349-388]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
T
L
K
S
L
---
G
E
---
C
C
D
V
E
D
S
T
T
C
F
N
A
K
G
P
L
L
K
K
---
E
L
S
----
S
F
I
D
K
G
Q
---------------------------------------------------------------------
4
PsiBlast_PDB
60.25
42%
-36
- C2 -
-
1LOT
1
VTDB_HUMAN
A:
[349-388]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
T
L
K
S
L
---
G
E
---
C
C
D
V
E
D
S
T
T
C
F
N
A
K
G
P
L
L
K
K
---
E
L
S
----
S
F
I
D
K
G
Q
---------------------------------------------------------------------
2
PsiBlast_PDB
59.37
42%
-19
- C2 -
-
1J78
1
VTDB_HUMAN
A:
[349-388]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
T
L
K
S
L
---
G
E
---
C
C
D
V
E
D
S
T
T
C
F
N
A
K
G
P
L
L
K
K
---
E
L
S
----
S
F
I
D
K
G
Q
---------------------------------------------------------------------
3
PsiBlast_PDB
58.37
42%
1
- C2 -
-
1J7E
1
VTDB_HUMAN
A:
[349-388]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
T
L
K
S
L
---
G
E
---
C
C
D
V
E
D
S
T
T
C
F
N
A
K
G
P
L
L
K
K
---
E
L
S
----
S
F
I
D
K
G
Q
---------------------------------------------------------------------
7
PsiBlast_PDB
58.02
42%
-113
- C2 -
-
1MA9
-
VTDB_HUMAN
A:
[349-388]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
T
L
K
S
L
---
G
E
---
C
C
----
S
T
T
C
F
N
A
K
G
P
L
L
K
K
---
E
L
S
----
S
F
I
D
K
G
Q
---------------------------------------------------------------------
5
PsiBlast_PDB
57.87
42%
3
- C2 -
-
1KW2
-
VTDB_HUMAN
A:
[365-404]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
T
L
K
S
L
---
G
E
---
C
C
D
V
E
D
S
T
T
C
F
N
A
K
G
P
L
L
K
K
---
E
L
S
----
S
F
I
D
K
G
Q
---------------------------------------------------------------------
42
Fugue
57.79
30%
110
- C2 -
-
1VP7
-
EX7S_BORPE
A:
[13-80]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
R
P
-
L
P
Q
D
F
E
T
A
L
A
E
L
E
S
L
V
S
-
A
M
E
N
G
T
---
L
P
-
L
E
Q
S
L
S
A
Y
R
-
R
G
V
E
L
A
R
---
V
C
Q
----
D
R
L
A
Q
A
E
-----
Q
Q
-----
V
K
V
L
E
G
D
L
-
L
R
P
L
--------------------------------------------
20
PsiBlast_CBE
57.04
42%
0
- C2 -
-
1J7E
1
VTDB_HUMAN
B:
[349-388]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
T
L
K
S
L
---
G
E
---
C
C
D
V
E
D
S
T
T
C
F
N
A
K
G
P
L
L
K
K
---
E
L
S
----
S
F
I
D
K
G
Q
---------------------------------------------------------------------
21
PsiBlast_CBE
56.58
42%
28
- C2 -
-
1J78
1
VTDB_HUMAN
B:
[349-388]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
P
T
L
K
S
L
---
G
E
---
C
C
D
V
E
D
S
T
T
C
F
N
A
K
G
P
L
L
K
K
---
E
L
S
----
S
F
I
D
K
G
Q
---------------------------------------------------------------------
44
Fugue
55.96
35%
38
- C1 -
-
2VDU
-
TRM82_YEAST
B:
[2-436]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SVIHPLQ
N
L
L
T
S
RDGS
L
V
F
A
I
I
KN
C
I
L
S
F
K
Y
Q
SP
N
H
W
E
F
A
G
K
W
S
D
DFPIYSYIRN
L
R
L
T
SDES
R
L
I
A
C
A
DSDK
S
L
L
V
F
D
V
D
KTSKNVLKLR
K
R
F
C
F
SKRPN
A
I
S
I
A
EDDT
T
V
I
I
A
D
KFG
D
V
Y
S
I
DINSIPEE
K
F
T
Q
E
P
ILGHVSMLT
D
V
H
L
I
K
D
SDG
H
Q
F
I
I
T
S
DRDE
H
I
K
I
S
H
Y
PQCFIVD
K
W
L
F
GHKHFVS
S
I
C
C
G
K
DY
L
L
L
S
A
G
GDD
K
I
F
A
W
DWKTGKNL
S
T
F
D
YNSLIKPYLNDQHLAIIE
F
A
V
S
K
I
I
K
S
K
N
LPFV
A
F
F
V
E
A
T
KCI
I
I
L
E
M
S
-
E
K
Q
K
------------------
G
D
---
L
A
-
L
K
Q
I
I
T
F
P
Y
-
N
V
I
S
L
S
A
H
N
D
E
F
Q
----
V
T
L
D
N
K
E
-----
S
S
GVQKN
F
A
K
F
I
E
Y
N
-
L
N
E
N
S
F
V
V
N
N
E
K
S
N
E
F
D
S
A
I
I
Q
S
V
Q
G
DSNLVTKKEEIYPLYNVSSL--
17
PsiBlast_PDB
55.75
29%
0
- C- -
-
4ON9
-
DDX58_HUMAN
A:
[375-462]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
F
E
E
K
L
Q
E
L
E
S
V
S
R
D
P
-
S
N
E
N
---
P
K
-
L
E
D
L
C
F
I
L
Q
-
E
E
Y
H
L
N
P
---
E
T
I
----
T
I
L
F
V
K
T
-----
R
A
-----
L
V
D
A
L
K
---------------------------------------------------
15
PsiBlast_PDB
55.75
29%
0
- C- -
-
3ZD6
-
DDX58_HUMAN
A:
[359-459]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
F
E
E
K
L
Q
E
L
E
S
V
S
R
D
P
-
S
N
E
N
---
P
K
-
L
E
D
L
C
F
I
L
Q
-
E
E
Y
H
L
N
P
---
E
T
I
----
T
I
L
F
V
K
T
-----
R
A
-----
L
V
D
A
L
K
---------------------------------------------------
14
PsiBlast_PDB
55.75
29%
0
- C- -
-
4BPB
-
DDX58_HUMAN
A:
[359-463]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
F
E
E
K
L
Q
E
L
E
S
V
S
R
D
P
-
S
N
E
N
---
P
K
-
L
E
D
L
C
F
I
L
Q
-
E
E
Y
H
L
N
P
---
E
T
I
----
T
I
L
F
V
K
T
-----
R
A
-----
L
V
D
A
L
K
---------------------------------------------------
12
PsiBlast_PDB
55.75
29%
0
- C- -
-
2YKG
-
DDX58_HUMAN
A:
[359-458]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
R
F
E
E
K
L
Q
E
L
E
S
V
S
R
D
P
-
S
N
E
N
---
P
K
-
L
E
D
L
C
F
I
L
Q
-
E
E
Y
H
L
N
P
---
E
T
I
----
T
I
L
F
V
K
T
-----
R
A
-----
L
V
D
A
L
K
---------------------------------------------------