@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : spr1337: (2018-01-10 )
MWKEIRKRGFKNKAFRTLEDVMNQLQDVIQGLEKEVIKSIVNRRWTRMLFENR
Atome Classification :
(20 SA)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........-------10---.-------.--..-----....20....--------...----.30.....-...40--..--.....--..50..---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------M
W
K
E
I
R
K
RG-------FK---N-------
K
--
A
F
-----
R
T
L
E
D
V
M
N
Q
L
--------
Q
D
V
----
I
Q
G
L
E
K
E
V
-
I
K
S
I
---
V
N
--
R
R
W
T
R
--
M
L
FENR---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
71.56
28%
36
- C2 -
-
4UDE
2
?
A:
[1-85]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------G
A
M
A
R
K
E
L
S
S
L
E
E
L
F
RHYGVR
Y
M
T
L
T
K
M
V
E
M
G
-------
F
T
---
V
-------
N
--
T
L
V
N
MT
E
Q
E
L
D
D
V
I
R
T
L
--------
V
D
I
YR
V
D
L
L
V
G
E
K
Y
G
-
I
K
S
A
---
V
R
--
A
E
K
R
R
--
L
D
E
L
E
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
26
Fugue
67.93
23%
-38
- C2 -
-
4QIK
2
RC3H1_HUMAN
A:
[4-313]
------------------------------------------------------------------------------------------GVE
D
T
K
H
Y
E
E
A
K
K
C
V
E
E
L
A
L
Y
L
KPLSSARGVGLNSTTQSVLS
R
P
M
Q
R
K
L
V
T
L
V
H
CQLVE
E
E
G
R
I
R
A
M
R
A
A
R
S
L
G
E
R
T
V
T
E
L
I
L
Q
H
QNPQQ
L
S
S
N
L
W
A
A
V
R
A
R
G
-------
C
Q
FLG
P
-------
A
M
-
Q
E
-----
E
A
L
K
L
V
L
L
A
L
--------
E
D
G
-----
S
A
L
S
R
K
V
-
L
V
L
F
---
V
V
--
Q
R
L
E
P
--
R
F
P
Q
A
S
K
T
S
I
G
H
V
V
Q
L
L
Y
R
A
SCFKS
L
M
Q
L
KEEFRT
Y
E
A
L
R
R
E
H
D
S
Q
I
V
Q
I
A
M
E
A
G
L
R
I
A
P
D
Q
W
S
S
L
L
YGDQSH
K
S
H
M
Q
S
I
I
D
K
L
QTPA
S
F
A
Q
S
V
Q
E
L
T
I
A
L
Q
R
T
GDPANLNRL
R
P
H
L
E
L
L
A
N
IDPSPDAPPPT
W
E
Q
L
E
N
G
L
V
A
V
R
T
V
V
H
G
L
V
D
Y
I
Q
N
H-------------------------------------------------------
6
HHSearch
64.83
17%
-167
- C2 -
-
3K9K
-
SETMR_HUMAN
A:
[613-647]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
K
H
L
N
N
-
F
-------
L
Q
---
G
-------
K
--
R
F
-----
H
N
Q
Q
D
A
E
N
A
F
--------
Q
E
F
----
V
E
S
Q
S
T
D
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
61.57
13%
-143
- C2 -
-
4MDB
-
MOS1T_DROMA
A:
[167-205]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
A
S
M
G
H
-
A
-------
L
A
---
E
-------
Q
--
R
F
-----
D
S
Y
E
S
V
K
K
W
L
--------
D
E
W
----
F
A
A
K
D
D
E
F
-
Y
W
R
G
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
34
Fugue
61.08
22%
-
- C2 -
-
3EB8
-
VIRA_SHIFL
A:
[53-399]
---------------------------------------------------A
E
K
H
S
E
K
K
L
M
D
S
F
S
P
S
LSQDKMDGEF
A
H
A
N
I
DG
I
S
I
R
L
C
L
N
KG
I
C
S
V
F
Y
L
DGDK
I
Q
S
T
Q
L
S
S
K
E
Y
N
N
L
L
S
S
LPPKQFNLG
K
V
H
T
I
T
A
P
V
S
G
N
FKTHKPA
P
E
V
I
E
T
A
I
N
C
C
T
S
I
I
PNDDYFHVKDTDFNS
V
W
H
D
I
Y
R
D
I
R
A
S
D
SNS
T
K
I
Y
F
N
---
N
-------
I
EI
P
L
-----
K
L
I
A
D
L
I
N
E
L
GINEFIDS
K
K
E
----
L
Q
M
L
S
Y
N
Q
-
V
N
K
I
---
I
N
--
S
N
F
P
Q
QD
L
C
F
Q
T
E
K
L
L
F
T
S
L
F
Q
D
P
A
F
I
S
A
L
T
S
A
F
WQSLHITS
S
S
V
E
H
I
Y
A
Q
I
M
S
E
N
I
E
N
R
L
N
FMPE
Q
R
V
I
NNC
G
H
I
I
K
I
N
A
VR
A
Y
E
V
S
S
S
I
L
P
S
HITCN
G
V
G
I
N
K
I
E
T
S
Y
L
V
H
AGTLPS
S
E
G
L
R
N
A
I
PPES
R
Q
V
S
F
A
I
I
S
P
D------------------------------------------------------------------------------
2
PsiBlast_PDB
59.91
35%
-2
- C2 -
-
4K2M
1
NTDA_BACSU
A:
[3-49]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Q
K
Q
V
K
I
S
G
--------
K
---
S
-------
K
--
E
N
-----
M
S
L
---
L
K
H
L
--------
K
G
D
----
V
Q
G
K
E
L
V
I
-
E
D
S
I
---
V
N
--
E
R
W
K
Q
--
V
L
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
59.13
20%
7
- C2 -
-
5M72
2
SRP72_HUMAN
A:
[2-151]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
V
P
A
L
W
S
E
V
N
R
Y
G
-------
Q
N
---
G
D
F
T
----
R
--
A
L
-----
K
T
V
N
K
I
L
Q
I
N
--------
K
D
D
----
V
T
A
L
H
C
K
V
-
V
C
L
I
---
Q
N
--
G
S
F
K
E
--
A
L
N
V
I
N
T
H
TKVLANNSL
S
F
E
K
A
Y
C
E
Y
R
L
NR
I
E
N
A
L
K
T
I
E
S
ANQQT
D
K
L
K
E
L
Y
G
Q
V
L
Y
R
L
ER
Y
D
E
C
L
A
V
Y
R
D
L
V
R
N
SQDDY
D
E
E
R
K
T
N
L
S
A
V
V
A
A
Q
S---------------------------------------------------------------------------------------------------------------------
5
HHSearch
59.10
17%
-204
- C2 -
-
3F2K
-
B:
[168-203]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
F
K
H
L
N
N
-
F
-------
L
Q
---
G
-------
K
--
R
F
-----
H
N
Q
Q
D
A
E
N
A
F
--------
Q
E
F
----
V
E
S
Q
S
T
D
F
-
Y
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
57.68
22%
113
- C2 -
-
2KSL
-
TXI1_ERAAG
A:
[1-51]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------S
E
P
D
E
I
C
R
A
R
-------
M
T
---
H
-------
K
--
E
F
-----
N
Y
K
S
N
V
C
N
G
C
--------
G
D
Q
----
V
A
A
C
E
A
E
C
-
F
R
------
N
--
D
V
Y
T
A
--
C
H
E
A
Q
K
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
57.57
14%
-108
- C2 -
-
4U7B
-
MOS1T_DROMA
A:
[284-318]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
A
S
M
G
H
-
A
-------
L
A
---
E
-------
Q
--
R
F
-----
D
S
Y
E
S
V
K
K
W
L
--------
D
E
W
----
F
A
A
K
D
D
E
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
52.27
28%
103
- C2 -
-
5EZ7
1
Y4991_PSEAE
A:
[2-392]
--------------------------------------------------------------------------------M
P
Q
A
L
S
T
D
I
L
I
V
G
GG
I
A
G
L
W
L
N
A
R
L
R
R
A
G
Y
A
T
V
L
V
E
SASLGGGQSVKSQGIIHGGTGAS
E
A
I
A
D
M
P
R
R
W
R
A
C
L
G
SDGELDLRGVRLLSE
A
H
Y
L
W
S
PVEQAKGED
L
P
P
A
L
R
D
K
G
-------
F
K
---
G
-------
K
--
A
Y
-----
R
-
L
T
E
I
V
F
D
V
--------
P
D
L
----
I
R
R
L
A
E
L
A
-
G
D
S
L
---
L
A
--
G
E
R
I
E
--
P
L
R
E
G
R
ELA
G
L
C
V
DG
R
E
I
R
A
Q
R
V
V
L
SAGAG
N
E
A
L
L
R
E
L
GLEQP
A
M
Q
R
R
P
L
H
M
V
M
V
K
A
ATL
K
P
L
Y
A
H
C
L
G
A
GPKPR
I
T
V
T
T
H
P
T
RDG
Q
S
V
W
Y
L
G
G
DIAE
T
D
G
V
A
RD
E
A
A
Q
I
A
E
A
R
R
E
L
A
K
LLPWIDLGQ
A
Q
W
A
T
L
R
V
D
R
A
E
P
A
QSNLLRPD
N
A
F
L
A
E
Q
GR
L
L
V
G
W
PTKLAL
A
P
D
F
A
D
R
V
C
A
R
L
E
E
D
GI
R
P
S
E
H
A
A
LPQ
L
P
R
P
P
L
A
E
P
A
W
E
V
A
F
A
13
HHSearch
50.73
13%
-146
- C2 -
-
2O73
1
URAD_DANRE
B:
[32-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
W
S
---
Y
-------
R
--
P
F
-----
K
D
L
A
D
I
E
A
R
I
--------
S
E
F
----
I
H
S
L
P
D
S
G
K
E
G
I
L
---
R
C
--
H
P
D
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.60
35%
52
- C2 -
-
4K2B
-
NTDA_BACSU
A:
[3-47]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
V
K
I
S
G
--------
K
---
S
-------
K
--
E
N
-----
M
S
L
---
L
K
H
L
--------
K
G
D
----
V
Q
G
K
E
L
V
I
-
E
D
S
I
---
V
N
--
E
R
W
K
Q
--
V
L
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
49.59
28%
96
- C2 -
-
4O5J
3
?
A:
[27-400]
LKN
L
N
E
K
Y
E
Q
L
S
Q
Y
L
N
Q
V
A
S
L
K
Q
S
I
Q
N
A
N
N
I
E
L
V
N
S
S
L
N
Y
L
K
S
F
T
N
N
N
Y
NSTTQS
P
I
F
N
A
V
Q
A
V
I
T
S
V
L
G
F
W
S
L
Y
AGNYFTFFVGKKVD
S
G
Q
P
A
SVQGNPPFKTIIENCSGIENCAMD
Q
T
T
Y
D
K
M
K
K
L
A
E
D
L
Q
A
A
Q
TNSATKGNNLCALSGCAATSNPPNST
V
S
N
A
L
N
L
A
Q
Q
L
M
D
L
I
A
N
TK
T
A
M
M
W
K
N
I
V
I
S
G
-------
V
S
---
N
TSGAIT
S
T
--
N
Y
-----
P
T
Q
Y
A
V
F
N
N
I
--------
K
A
M
----
I
P
I
L
Q
Q
A
V
-
T
L
S
Q
---
S
N
--
H
T
L
S
A
--
S
L
Q
A
Q
A
TGSQTN
P
K
F
A
K
D
I
Y
T
F
A
Q
N
Q
K
Q
V
I
S
Y
A
Q
D
I
F
N
L
F
N
S
IP
A
E
Q
Y
K
Y
L
E
K
AYLKIPNAGSTPTNPYRQVVN
L
N
Q
E
V
Q
T
I
K
N
N
V
S
Y
Y
G
N
R
V
D
A
A
L
S
V
A
R
D
V
Y
N
L
K
S
N
Q
A
E
I
V
T
A
Y
N
D
A
K
T
L
S
E
E
I
S
K
LPH---------------------------------------------------------------------------------
1
PsiBlast_PDB
48.25
35%
52
- C2 -
-
4K2I
-
NTDA_BACSU
A:
[5-49]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
Q
V
K
I
S
G
--------
K
---
S
-------
K
--
E
N
-----
M
S
L
---
L
K
H
L
--------
K
G
D
----
V
Q
G
K
E
L
V
I
-
E
D
S
I
---
V
N
--
E
R
W
K
Q
--
V
L
K
E
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
47.68
23%
163
- C2 -
-
4LEU
-
PP266_ARATH
A:
[71-252]
------------------------------------------------------------------------------------------------------------------------------KLIG
K
E
A
L
F
V
I
L
G
L
K
R
L
KED
D
E
K
L
D
K
F
I
K
T
HVFRLL
K
L
D
M
L
A
V
I
G
E
L
E
R
Q
EE
T
A
L
A
I
K
M
F
E
V
I
Q
K
Q
E
-------
W
Y
---
Q
-------
P
--
D
------------
V
F
M
Y
--------
K
D
L
----
I
V
S
L
A
K
S
K
-
R
M
D
E
---
A
M
--
A
L
W
E
K
--
M
K
K
E
N
L
F
P
D
S
Q
T
Y
T
E
V
I
R
G
F
L
R
D
GC
P
A
D
A
M
N
V
Y
E
D
M
L
K
SPDPPEE
L
P
F
R
V
L
L
K
G
L
L
PH
P
L
L
R
N
K
V
K
K
D
F
E
E
L
F
P
EKHAYDPPEE---------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
47.54
14%
-98
- C2 -
-
5CR4
-
?
B:
[171-205]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
W
A
E
L
K
K
-
R
-------
V
R
---
A
-------
R
--
R
P
-----
T
N
L
T
Q
L
H
Q
L
C
--------
Q
E
E
----
W
A
K
I
H
P
N
Y
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
33
Fugue
45.40
15%
116
- C2 -
-
2ZSH
-
GAI_ARATH
B:
[23-88]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------G
M
D
E
L
L
A
V
L
G
-------
Y
K
V
R
-
S
-------
S
--
E
M
-----
A
D
V
A
Q
K
L
E
Q
L
--------
E
V
M
M
---
S
N
V
L
A
T
E
T
-
V
H
Y
N
---
P
A
E
L
Y
T
W
L
D
--
S
M
L
T
D
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
45.33
13%
-135
- C2 -
-
2O74
1
URAD_DANRE
F:
[32-70]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
-------
W
S
---
Y
-------
R
--
P
F
-----
K
D
L
A
D
I
E
A
R
I
--------
S
E
F
----
I
H
S
L
P
D
S
G
K
E
G
I
L
---
R
C
--
H
P
D
L
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
32
Fugue
39.00
21%
37
- C1 -
-
4D4W
-
A:
[1-61]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
P
L
G
S
E
Q
R
M
-------
F
K
---
R
VGCGEC-
A
--
A
C
-----
Q
V
T
E
D
C
-
G
A
C
--------
S
T
C
----
L
L
Q
L
P
H
D
V
-
A
S
G
L
FCK
C
E
--
R
R
R
C
L
--
R
I
V
E
R
S
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------