@TOME V2.3
(Mar 2018)
Ref.
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VN17: (2017-11-12 )
MNAPVKTENHLSVQQESPIDKTLSMIERIALDPSSNVAKLEKMIELQERVMKTQAKQAYDNAMVLAQSEMPPIDKFKKGHNSNYAPLDHIMSIVFPVLKRNNLFVRWTSDPKENGSLCVTCICSHVGGHSETSSMDVKEDRGGSKSDIQGMGSAFTYAKRYTLSALLGLVLTDDTDGARINLKVTDAQATMLRNKLKFFKPEALEAFKAKIGCEVEELPRGDFDYWCSYIDNQINKLMANQGEKNANP
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10........20........30........40.......--.50..-......60.......------------.70.-.......80.......--.90........100-.......110.......120.......130.....--..140.......150.......------160-........170..-......180.--------------------------------......190.-......200.....------------...210.......220-.......230.........240......
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNAPVKTENHLSVQQESP
I
D
K
T
L
S
M
I
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R
IALDPSS
N
V
A
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E
K
M
I
E
L
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E
--
R
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M
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T
-
Q
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AYD
N
A
M
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AQS------------EMP
P
-
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K
F
KKGHNSNYA
P
L
D
--
H
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P
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LKRN
N
-
L
F
V
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WTSDPKENG
S
L
C
V
T
C
I
C
S
HVGGHSETSSMDV--KEDRGGSK
S
D
I
Q
G
M
G
S
A
F
T
Y
A
K
------
R
Y
--
T
L
S
A
L
L
G
L
V
-LTD-DTDG
A
R
I
N
L
K
--------------------------------
V
TD
A
Q
A
T
M
L
R
-
N
K
L
K
FF
K
-
P
E
A
L
E
A
------------
F
K
A
K
IGC
E
V
E
ELPRG
D
-
F
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Y
W
C
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Y
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--
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N
Q
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K
L
M
ANQGEKNANP
24
Fugue
81.00
15%
-
- C3 -
-
4N74
-
?
A:
[264-577]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TQ
N
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TDV
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--
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YDR
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RSIRGYKYKS
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ANG
D
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A
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SDIRRSD
F
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-
23
Fugue
65.66
21%
-15
- C3 -
-
4D0L
2
PI4KB_HUMAN
A:
[10-566]
S
W
L
L
R
L
F
E
SKLFD
I
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M
A
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Y
N
SKE
P
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FCFR
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HMD
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SRL
A
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ATLPT
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N
H
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LPARVWLPTAG
F
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RVPHTQAVVLNSKDK
A
P
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L
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C
ENFDTTSV
P
A
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PENPSAVALKEP
W
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SPYGHLPN
W
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CGDDL
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RVP
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ISAD
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----
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Q
---------------------
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EG
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-
S
A
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K
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T
-----------
T
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F
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D
V
M
G
G
L
D
-----------------------
G
D
M
F
N
Y
Y
K
------
M
L
--
M
L
Q
G
L
I
A
A
R
----------
K
H
M
D
K
--------------------------------
V
V
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E
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M
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N
------------
L
K
E
R
F
H
M
---------------
S
M
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--
E
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Q
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Q
L
L
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D
G
S
M
R
S
27
Fugue
55.48
11%
-21
- C1 -
-
1YAR
-
?
O:
[10-237]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
R
A
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A
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------------
L
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---------
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GE
K
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A
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M
Y
A
L
R
E
Y
L
S
A
------
R
S
--
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K
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L
G
G
--
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-
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L
L
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R
--------------------------------
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A
------------
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---------------------
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M
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S
22
Fugue
52.82
21%
71
* C3 *
-
5JEN
-
LYSC_CHICK (first)
A:
[62-271]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
V
K
A
I
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I
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K
--------------
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------------
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-
Y
W
--------------------------------
L
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A
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F
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------------
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Y
I
R
---
7
PsiBlast_PDB
49.39
39%
-113
- C4 -
-
3WP1
-
B:
[129-156]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
V
L
E
I
N
K
--
R
I
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E
E
-
Q
A
R
K
A
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D
R
A
T
K
L
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
PsiBlast_PDB
49.01
39%
-126
- C4 -
-
1JXM
-
A:
[232-259]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
V
L
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I
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K
--
R
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T
E
E
-
Q
A
R
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A
F
D
R
A
T
K
L
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
PsiBlast_PDB
48.90
39%
-105
- C4 -
-
1KJW
-
A:
[226-253]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
V
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--
R
I
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E
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-
Q
A
R
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A
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R
A
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L
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
PsiBlast_PDB
48.50
39%
-122
- C4 -
-
5B64
-
A:
[131-158]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
V
L
E
I
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--
R
I
T
E
E
-
Q
A
R
K
A
F
D
R
A
T
K
L
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
PsiBlast_PDB
46.71
39%
-111
- C4 -
-
3WP0
1
A:
[129-156]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
V
L
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--
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-
Q
A
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Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
PsiBlast_PDB
46.42
39%
-120
- C4 -
-
1JXO
-
DLG4_RAT
A:
[655-682]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
E
N
V
L
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I
N
K
--
R
I
T
E
E
-
Q
A
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A
F
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R
A
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L
E
Q
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
43.47
16%
-92
- C4 -
-
1V8D
-
Y214_THET2 (first)
A:
[77-154]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
T
R
P
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L
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A
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--
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A
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P
H
------------
P
K
A
G
G
A
K
A
T
A
A
F
------
L
R
--
F
-----------------------------------------------------------------------------------------------------------------------------------------
16
HHSearch
42.55
8%
-190
- C4 -
-
1TH5
-
NIFU1_ORYSJ
A:
[158-182]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
N
V
E
--
K
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L
N
E
I
R
P
Y
L
A
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G
G
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L
Q
F
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
34.17
18%
67
- C4 -
-
4OD8
-
A20_VACCC
C:
[3-52]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
A
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S
A
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W
G
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------------
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K
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V
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V
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
32.95
14%
-226
- C4 -
-
1WFY
-
A:
[39-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
L
Q
E
A
L
Q
P
I
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A
K
H
G
-
L
S
L
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V
V
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
31.73
11%
8
- C4 -
-
2AZE
-
E2F1_HUMAN
B:
[215-252]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
S
E
Q
Q
L
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H
L
M
N
I
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T
------------
Q
L
R
L
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Q
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L
A
Y
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C
Q
--
D
L
R
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
31.01
21%
85
- C4 -
-
5TUU
-
B:
[8-60]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
K
L
I
E
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K
A
--
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I
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E
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Q
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H
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Q
------------
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N
-
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T
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D
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Q
N
S
C
L
A
Y
V
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H
E
--
D
I
C
R
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
30.75
17%
-119
- C4 -
-
2LSE
-
?
A:
[50-85]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
E
K
F
R
D
------------
E
M
E
Q
-
M
Y
K
D
A
P
N
-----
A
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M
E
--
Q
L
L
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K
L
L
K
K
A
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
30.61
15%
89
- C3 -
-
2W0C
-
P3_BPPM2
P:
[1-65]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
N
T
S
V
P
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P
T
N
Q
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W
G
N
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S
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G
---
L
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I
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A
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G
R
V
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Q
A
------------
M
T
P
E
-
L
D
N
G
A
A
V
V
V
E
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
30.43
8%
80
- C4 -
-
3T97
-
NUP54_RAT
B:
[345-402]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
M
T
K
Q
H
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D
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N
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A
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K
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--
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I
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S
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
29.78
12%
141
* C4 *
-
2YMY
-
RASF5_MOUSE
A:
[2-41]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
P
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N
F
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--
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Q
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K
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Y
N
K
F
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E
------------
A
L
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S
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------