@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VQ99: (2017-11-25 )
MIVVTLTYKKPLTEVDAVLKEHIAFLDHYYEQKKFLASGRRENRVGGVILVLSSSIQEAEEIMKNDPFYIHDVADYDFMWFEPSKSLEEIKEFV
Atome Classification :
(20 SA)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10---.----....-....20........--30.----.......--------40-...--------------------------..--.--...50.....-------...60.....--------...70...-..----------...80------.........90...------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
I
V
V
T
L
TYKK----P----
L
T
E
V
-
D
A
V
L
K
E
H
I
A
F
L
D
H
Y
--
Y
E
Q
----
K
K
F
L
ASG--------R--REN--------------------------RV--
G
--
G
V
I
L
V
L
S
S
S
I
-------
Q
E
A
E
E
I
M
KND--------
P
F
Y
I
H
DVA-DY----------
D
F
M
W
-------FEPS
K
S
L
E
E
I
K
E
FV------------
8
HHSearch
65.58
20%
-19
- C3 -
-
1MWQ
1
Y828_HAEIN
B:
[6-100]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
V
I
F
A
Q
D
I
P
----
N
T---
L
E
K
R
-
L
A
V
R
E
Q
H
L
A
R
L
K
Q
L
--
Q
A
E
----
N
R
L
L
T
A
G
--------
P
--
N
P
A
IDDENPSEAG----------------
F
T
--
G
--
S
T
V
I
A
Q
F
E
N
L
-------
Q
A
A
K
D
W
A
A
Q
D
--------
P
Y
V
E
A
G
V
Y
A
D
V
----------
I
V
K
P
-------
F
K
K
V
----------------------
14
HHSearch
61.73
16%
-64
- C3 -
-
1S7I
-
?
A:
[25-123]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
E
E
L
-
A
A
I
V
D
E
C
M
T
Y
S
D
Q
L
--
G
K
A
----
G
H
Y
I
A
S
H
--------
A
--
L
Q
S
VQT
A
T
T
L
R
H
Q
GG
R
L
A
M
T
D
G
PFAETKE
Q
L
--
G
--
G
F
Y
L
I
E
A
R
D
L
-------
N
Q
A
L
Q
I
A
A
K
I
--------
P
P
G
R
L
G
---
C
V
----------
E
V
R
P
-------
V
K
E
W
E
G
--------------------
12
HHSearch
61.36
17%
0
- C- -
-
3ZNJ
-
?
M:
[3-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
V
R
M
T
V
N
L
PRNL
D
----
P
R
E
E
-
E
R
L
K
A
S
E
K
A
R
S
R
T
L
--
Q
E
Q
----
G
Q
W
R
Y
L
W
--------
R
--
T
T
G
--------------------------
K
Y
--
G
--
N
I
S
V
F
D
V
N
S
H
-------
D
E
L
H
E
I
L
W
S
L
--------
P
F
F
P
--
Y
L
-
T
I
----------
D
V
E
P
-------
L
S
H
H
P
A
R
V
G
-----------------
33
Fugue
59.49
20%
11
- C3 -
-
4OHC
3
?
A:
[10-230]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGYD
R
Q
S
I
S
D
T
T
A
K
I
L
L
E
V
QA
V
H
F
N
AEKPFIFTSGWASP
V
Y
I
D
C
R
K
L
I
S
Y
P
R
V
R
R
A
L
M
E
M
A
E
T
T
I
T
R
D
IGFEQID
A
V
A
G
G
E
TAG
I
P
F
A
A
W
I
A
D
R
M
M
V
P
M
Q
Y
V
R
KKPKGFGRNAQIEGHLEEGSR
V
L
L
V
E
D
L
T
T
D
S
----
R
--------------------------
S
K
----
I
N
F
V
N
A
L
--------
R
--
T
A
G
A-------------------------
T
V
--
N
--
H
C
F
V
L
F
H
Y
N
I
F------
K
E
S
V
S
V
L
K
D
I
--------
D
V
D
L
H
A
L
A
-
T
W
----------
W
D
V
L
R
V
A
K
A
S
G
Y
F
E
T
K
T
L
D
E
V
E
K
F
L
H
A
P
A
E
W
S
A
A
H
GG
31
Fugue
58.52
17%
-
- C1 -
-
4RFX
-
DCTN1_CHICK
A:
[432-531]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
V
E
T
L
T
E
R
N
L
----
D
----
L
E
E
K
-
V
R
E
L
R
E
T
V
G
D
L
E
A
M
--
N
E
M
----
N
D
E
L
Q
E
N
--------
A
--
R
E
T
--------------------------
E
L
--
E
L
R
E
Q
L
D
L
A
A
A
R
V
-------
R
E
A
E
K
R
V
E
A
A
--------
Q
E
T
V
A
D
Y
Q
-
Q
T
----------
I
K
K
Y
-------
R
E
L
T
A
H
L
Q
D
V
N
R
E
L
M
S
Q
Q--------
13
HHSearch
56.72
17%
-42
- C3 -
-
3ZNU
-
?
G:
[3-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
L
V
R
M
T
V
N
L
PRNL
D
----
P
R
E
E
-
E
R
L
K
A
S
E
K
A
R
S
R
T
L
--
Q
E
Q
----
G
Q
W
R
Y
L
W
--------
R
--
T
T
G
--------------------------
K
Y
--
G
--
N
I
S
V
F
D
V
N
S
H
-------
D
E
L
H
E
I
L
W
S
L
--------
P
F
F
P
--
Y
L
-
T
I
----------
D
V
E
P
-------
L
S
H
H
P
A
R
V
G
-----------------
10
HHSearch
54.69
16%
18
- C3 -
-
4LBH
1
?
A:
[3-94]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
I
Y
R
K
D
R
P
----
G
S---
L
Q
V
R
-
I
D
N
Y
A
A
H
L
A
Y
L
E
P
L
--
K
A
K
IQ
V
G
G
P
T
L
G
A
G
--------
T
--
G
T
D
DKD-----------------------
M
T
--
G
--
S
F
L
I
M
E
A
E
S
W
-------
D
E
V
H
S
F
V
E
N
D
--------
P
F
T
K
A
G
L
F
A
A
T
----------
I
V
E
R
-------
W
K
H
G
----------------------
9
HHSearch
52.36
16%
25
- C3 -
-
4LBP
-
?
A:
[3-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
L
I
Y
R
K
D
R
P
----
G
S---
L
Q
V
R
-
I
D
N
Y
A
A
H
L
A
Y
L
E
P
L
--
K
A
K
IQ
V
G
G
P
T
L
G
A
G
--------
T
--
G
T
D
DKD-----------------------
M
T
--
G
--
S
F
L
I
M
E
A
E
S
W
-------
D
E
V
H
S
F
V
E
N
D
--------
P
F
T
K
A
G
L
F
A
A
T
----------
I
V
E
R
-------
W
K
H
G
K
H
N
D
------------------
37
Fugue
51.52
38%
-292
* C3 *
-
2F7X
-
IPKA_PIG
I:
[1-20]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
Y
----
A
D
F
I
A
S
G
--------
R
TG
R
R
N
--------------------------
A
I
--
H
--
D
--------------------------------------------------------------------------------------------
11
HHSearch
50.90
10%
-
- C3 -
-
1MLI
-
CATC_PSEPU
D:
[3-92]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
H
V
K
M
T
V
K
L
----
P
VDMD
P
A
K
A
-
T
Q
L
K
A
D
E
K
E
L
A
Q
R
L
--
Q
R
E
----
G
T
W
R
H
L
W
--------
R
--
I
A
G
--------------------------
H
Y
--
A
--
N
Y
S
V
F
D
V
P
S
V
-------
E
A
L
H
D
T
L
M
Q
L
--------
P
L
F
P
--
Y
M
-
D
I
----------
E
V
D
G
-------
L
C
R
H
P
S
S
I
H
-----------------
38
Fugue
49.70
38%
-240
- C3 -
-
1APM
-
IPKA_MOUSE
I:
[1-20]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
T
Y
----
A
D
F
I
A
S
G
--------
R
TG
R
R
N
--------------------------
A
I
--
H
--
D
--------------------------------------------------------------------------------------------
36
Fugue
49.41
19%
46
- C3 -
-
2BMF
-
?
A:
[169-618]
MASIED
N
P
E
I
E
D
DIFRKK
R
L
T
I
MDLHPGAGKTKR
Y
L
P
A
I
V
R
E
A
I
K
R
GLR
T
L
I
L
A
PT
R
V
V
A
A
E
M
E
E
A
L
RGLPIRYQTGREI
V
D
L
M
C
H
A
T
F
T
M
R
L
L
SPIRVPNYN
L
I
I
M
D
EAHFTD
P
A
S
I
A
A
R
G
Y
I
S
T
R
V
E
M
GE
A
A
G
I
F
M
T
ATPPGSRDPFPQSNAPIM
D
E
E
R
EIPERSWN
S
G
H
E
WVTDFKGK
T
V
W
F
V
P
S
I
K
A
G
N
D
I
A
A
C
L
R
K
N
G
K
K
V
I
Q
LSRKTFDSEYIKTRTNDWD
F
V
V
T
T
DISEMGANFKAE
R
V
I
D
PR
R
C
M
K
P
V
I
L
T
DG
E
E
R
V
I
LA
G
P
M
P
V
T
H
S
S
A
A
Q
R
R
G
RVGRNPKNEN
D
Q
Y
I
Y
M
G
E
P
L
E
NDEDCA
H
W
K
E
A
K
M
L
L
D
N
INTPEG
I
I
P
S
M
FEPEREKVDAIDGEYRLR
G
E
A
R
K
T
F
V
D
L
M
R
R
-----------
G
D
L
-
P
V
W
L
A
Y
R
V
A
A
E
G
I
N
--
Y
A
D
----
R
R
W
C
F
D
G
--------
V
--
K
N
N
--------------------------
Q
I
LE
E
--
N
V
E
V
E
I
W
T
K
E
-------
G
E
R
K
K
L
K
-----------
P
R
W
L
-----------------
D
A
R
I
-------
Y
S
D
P
L
A
L
K
E
F
K
E
F
A
A
GRK--------
35
Fugue
48.28
18%
29
- C3 -
-
3H16
-
?
A:
[18-153]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------APPH
D
I
F
I
S
H
A
W
E
D
----
K
----
A
D
F
V
-
E
A
L
A
H
T
L
R
A
A
G
A
E
V
--
W
Y
D
----
D
F
S
L
R
P
G
DS
L
R
R
S
I
D
K
--
G
L
G
--------------------------
S
S
--
R
--
F
G
I
V
V
L
S
T
H
F
F
K
KEWP
Q
K
E
L
D
G
L
F
Q
L
E
SSGRSR
I
L
P
I
W
H
K
V
S
K
-
D
E
VASFS
P
T
M
A
D
K
L
A
F
-------
N
T
S
T
K
S
V
D
E
I
V
A
D
L
M
A
I
I
R-------
30
Fugue
45.99
16%
-106
- C3 -
-
4CU5
-
?
A:
[186-270]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
K
H
T
I
V
Y
D
G
-----------
E
V
-
D
K
I
S
A
T
V
V
G
W
G
Y
N
D
--
G
K
I
----
L
I
C
D
I
K
D
--------
Y
--
V
P
G
--------------------------
Q
T
--
Q
--
N
L
Y
V
V
G
G
G
A
C
-------
E
K
I
S
S
I
T
K
E
K
--------
F
I
M
I
K
G
N
D
-
R
F
----------
D
T
L
Y
-----------
K
A
L
D
F
I
N
R
--------------
34
Fugue
44.07
14%
-19
- C3 -
-
1WD6
-
YDHR_ECOLI
A:
[2-98]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
T
L
L
Q
L
H
F
A
F
N
G
----
P
----
F
G
D
A
M
A
E
Q
L
K
P
L
A
E
S
I
N
Q
E
PG
F
L
W
----
K
V
W
T
E
S
---------
E
--
K
N
H
--------------------------
E
A
--
G
--
G
I
Y
L
F
T
D
E
K
S
-------
A
L
A
Y
L
E
K
H
T
A
--------
R
L
K
N
L
G
V
E
-
E
V
----------
V
A
K
V
-------
F
D
V
N
E
P
L
S
Q
I
N
Q
A
-------------
26
HHSearch
43.82
18%
-237
- C3 -
-
2HIQ
-
YDHR_ECOLI
B:
[55-76]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
H
--------------------------
E
A
--
G
--
G
I
Y
L
F
T
--
D
E
-------
K
S
A
L
A
Y
L
E
K
H
------------------------------------------------------------------
5
PsiBlast_PDB
39.32
32%
-88
- C3 -
-
2XC7
1
A:
[56-98]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
I
M
N
G
--------
S
--
R
R
R
--------------------------
T
P
--
G
--
G
V
F
L
N
L
L
K
N
T
-------
P
S
I
S
E
E
Q
I
K
D
--------
I
F
Y
I
E
N
Q
K
-
E
Y
----------
E
------------------------------------
7
PsiBlast_CBE
34.77
32%
-113
- C3 -
-
3PYM
2
G3P3_YEAST
B:
[11-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
--
G
--
R
L
V
M
R
I
A
L
S
R
-------
P
N
V
E
V
V
A
L
N
D
--------
P
F
I
T
N
D
Y
A
-
A
Y
----------
M
F
K
Y
---------------------------------
2
PsiBlast_PDB
34.39
32%
-92
- C3 -
-
3PYM
2
G3P3_YEAST
A:
[11-47]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
I
--
G
--
R
L
V
M
R
I
A
L
S
R
-------
P
N
V
E
V
V
A
L
N
D
--------
P
F
I
T
N
D
Y
A
-
A
Y
----------
M
F
K
Y
---------------------------------
4
PsiBlast_PDB
33.36
41%
86
- C3 -
-
3RJL
-
ROCA_BACLD
A:
[126-159]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
----
P
----
W
N
E
A
-
D
A
D
T
A
E
A
I
D
F
M
E
Y
Y
--
A
R
Q
----
M
I
E
L
A
K
G
--------
K
--
P
V
N
------------------------------------------------------------------------------------------------------------------------------