@TOME V2.3
(Mar 2018)
Ref.
-
-
Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VTT8: (2017-12-15 )
MNMDTIEAKKNLNALCNEIEKLQNLSRSLMTAKEMLDIDAKIKRHKDQVKNIRSNLHA
Atome Classification :
(20 SA)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10.-----.----......20-........30-----------....-----..--...40...-.....50.......---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNM
D
T
I
E
A
K
K
N
L
-----
N
----
A
L
C
N
E
I
E
K
-
L
Q
N
L
S
R
S
L
M
------------
T
A
K
E
-----
M
L
--
D
I
D
A
K
I
K
R
-
H
K
D
Q
V
K
N
I
R
S
NLHA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
72.84
24%
-180
- C1 -
-
5J0K
-
?
B:
[24-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
K
R
L
-----
K
----
E
L
L
R
E
L
E
R
-
L
Q
---
R
E
G
S
------------
S
D
E
D
-----
V
R
--
E
L
L
R
E
I
K
E
-
L
V
E
E
I
E
K
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
71.99
24%
-144
- C1 -
-
5J0K
-
?
A:
[24-65]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
K
R
L
-----
K
----
E
L
L
R
E
L
E
R
-
L
Q
---
R
E
G
S
------------
S
D
E
D
-----
V
R
--
E
L
L
R
E
I
K
E
-
L
V
E
E
I
E
K
L
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
63.82
15%
-156
- C1 -
-
1G6U
1
?
B:
[6-44]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
K
S
E
-
L
Q
A
L
K
K
E
G
F
------------
S
P
E
E
-----
L
A
--
A
L
E
S
E
L
Q
A
-
L
E
K
K
L
A
A
L
K
S
K
L
Q
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
59.77
21%
-117
- C1 -
-
3IP4
-
GATC_STAAM
C:
[6-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
E
V
E
H
-
I
A
N
L
A
R
L
Q
I
------------
S
P
E
E
-----
T
E
--
E
M
A
N
T
L
E
S
-
I
L
D
F
A
K
Q
N
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
59.52
18%
163
- C1 -
-
2NCJ
-
?
A:
[1-171]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MRTP
L
L
L
Q
S
L
K
T
R
V
A
A
L
H
T
L
I
G
P
L
A
S
Q
R
H
F
S
PRFDRQLFACRGAR
L
G
D
Y
L
T
E
A
E
E
S
L
T
H
L
E
A
A
V
N
Q
GD
A
T
R
V
A
W
L
A
E
R
L
A
A
Q
I
E
A
L
Q
R
E
A
A
T
A
T
L
R
R
H
E
NAHLPGG
R
L
H
A
R
L
A
E
Y
Q
E
Y
E
R
R
L
-----
L
----
A
M
K
N
E
R
E
Q
-
R
Y
A
E
R
H
D
P
Q
------------
L
A
R
E
-----
I
T
--
A
L
D
E
R
L
T
R
-
C
R
T
A
I
A
R
T
E
R
A
L
E
R
I
TR------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
3
HHSearch
59.10
21%
-97
- C1 -
-
2G5H
-
GATC_STAAM
C:
[6-43]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
E
V
E
H
-
I
A
N
L
A
R
L
Q
I
------------
S
P
E
E
-----
T
E
--
E
M
A
N
T
L
E
S
-
I
L
D
F
A
K
Q
N
D
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
58.23
17%
43
- C1 -
-
2G0U
-
?
A:
[1-92]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MS
N
P
P
T
P
L
LADYEWSGY
L
T
G
I
G
R
A
F
D
DGV
K
D
L
N
K
Q
L
Q
D
A
Q
A
N
L
-----
T
----
K
N
P
S
D
P
T
A
-
L
A
N
Y
Q
M
I
M
S
------------
E
Y
N
L
-----
Y
R
--
N
A
Q
S
S
A
V
K
S
M
K
D
I
D
S
S
I
L
E
H
H
H
H
HH-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
31
Fugue
57.40
19%
-18
- C1 -
-
3X0D
1
ANM7_CAEEL
A:
[29-652]
D
Y
D
M
A
Q
E
L
A
R
SRFGDMILD
F
D
R
N
D
K
F
L
A
G
L
K
T
T
I
A
E
K
K
H
E
NTDG
K
V
H
V
L
D
I
GTGTG
L
L
S
L
M
A
A
R
E
GAD
K
V
T
A
L
E
VF
K
P
M
G
D
C
A
R
H
I
T
S
N
SPWSDK
I
T
V
I
SERSTDVSQIGGSRAD
I
I
V
A
EVFDTELIGEG
A
L
R
T
F
K
E
A
L
E
RLAKPGCRVVPS
T
G
N
V
Y
I
V
P
V
E
S
H
L
L
K
M
F
N
DIPRLNGEKDEEPLGRCSGTAA
V
F
D
V
QLSEMKTHEFRELSEPIVA
F
K
F
D
FEHEEKIIF
D
E
S
F
V
R
E
A
V
A
H
S
S
G
T
ID
A
L
L
M
W
W
D
I
D
MDRNGTTFIDMGPKWKNKNN
Y
A
W
R
D
H
W
M
Q
A
V
Y
Y
L
P
E
K
K
K
V
E
M
N
Q
T
F
E
I
V
C
N
H
D
EF
S
L
W
F
S
N
V
G
K
D
K
S
R
S
-----
Y
----
C
V
C
G
L
H
S
M
-
L
S
--
R
Q
T
V
Y
------------
H
V
N
E
-----
M
F
--
E
N
----
Q
K
-
F
K
D
E
V
D
K
L
S
K
G
L
H
V
A
T
V
G
E
GSF
L
G
L
L
A
A
K
T
AK
R
V
T
I
I
D
GN
E
R
F
R
D
I
F
F
K
Y
I
H
Y
Y
KLTN
V
E
I
I
E
K
VTSLTDSPD
I
V
L
A
EPFYMSAMNPWNHLR
F
L
Y
D
V
E
V
L
K
M
M
HGDELRVEPH
M
G
V
L
K
A
I
P
E
K
F
ED
L
Q
N
I
A
SDVGTVNGFDL
S
F
F
D
E
I
S
T
K
A
R
T
A
TDAI
V
D
E
Q
SLWE
Y
A
G
I
V
K
G
DAVEI
L
R
F
P
IDG
R
V
S
S
Q
K
C
V
V
N
I
D
NMSSSN
A
I
P
M
W
M
E
W
E
F
GG
I
N
L
S
TGLLSISSAG
V
P
E
W
NKG
Y
K
Q
G
V
Y
F
PITALRNDK
S
L
C
L
H
A
L
FDKSTG
D
I
N
F
Q
F
G
K
S------------------------------------------------------------------------------------------------------------
5
HHSearch
56.56
21%
-172
- C1 -
-
3KFU
-
GATC_THET8
G:
[8-46]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
E
L
L
R
K
-
L
E
T
L
A
K
I
R
L
------------
S
P
E
E
-----
E
A
--
L
L
L
Q
D
L
K
R
-
I
L
D
F
V
D
A
L
P
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
28
Fugue
56.54
15%
65
- C1 -
-
2JS5
-
?
A:
[1-71]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
S
E
G
A
E
E
L
K
A
K
L
-----
K
----
K
L
N
A
Q
A
T
A
-
L
K
M
D
L
H
D
L
A
E
D
LPTGWNR
I
M
E
V
A
E
K
-----
T
Y
--
E
A
Y
R
Q
L
D
E
-
F
R
K
S
T
A
S
L
E
H
H
H
H
H
H--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
56.46
4%
-154
- C1 -
-
2V8S
2
VTI1B_HUMAN
V:
[48-94]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
D
E
K
Q
-----
Q
----
E
A
N
E
T
L
A
E
-
M
E
E
E
L
R
Y
-
A
------------
P
L
T
F
-----
R
N
--
P
M
M
S
K
L
R
N
-
Y
R
K
D
L
A
K
L
H
R
E
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
56.22
26%
-37
- C1 -
-
3HE5
-
?
C:
[4-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
Q
L
E
N
E
V
A
S
-
L
E
N
E
N
E
T
L
K
--------------
K
K
-----
N
L
--
H
K
K
D
L
I
A
Y
-
L
E
K
E
I
A
N
L
R
K
K
I
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
55.41
4%
-138
- C1 -
-
2QYW
-
VTI1B_MOUSE
A:
[47-95]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
D
F
D
E
K
Q
-----
Q
----
E
A
N
E
T
L
A
E
-
M
E
E
E
L
R
Y
-
A
------------
P
L
T
F
-----
R
N
--
P
M
M
S
K
L
R
N
-
Y
R
K
D
L
A
K
L
H
R
E
V
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
9
HHSearch
54.90
10%
-173
- C1 -
-
1VCS
-
VTI1A_MOUSE
A:
[43-90]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
E
K
Q
L
-----
E
----
E
A
R
E
L
L
E
Q
-
M
D
L
E
V
R
E
-
I
------------
P
P
Q
S
-----
R
G
--
M
Y
S
N
R
M
R
S
-
Y
K
Q
E
M
G
K
L
E
T
D
F
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
54.63
13%
-216
- C1 -
-
3H0L
-
GATC_AQUAE
L:
[4-41]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
W
V
L
K
-
I
A
K
L
A
R
L
E
L
------------
K
E
E
E
-----
I
E
--
V
F
Q
K
Q
L
S
D
-
I
L
D
F
I
D
Q
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
54.31
17%
-
- C1 -
-
4NLE
-
?
A:
[4-471]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TIPNVLANRYAS
D
E
M
V
A
I
W
S
P
E
A
K
I
I
A
E
R
R
L
W
L
A
V
L
R
A
Q
A
E
L
GVAVP
D
----
G
V
V
E
D
Y
E
R
V
L
E
N
V
D
L
E
S
I
------------
A
A
R
E
-----
R
V
RH
D
V
K
A
R
I
E
E
-
F
N
A
H
-
E
H
V
H
K
G
M
T
S
R
D
L
T
E
N
V
E
Q
L
Q
I
R
Q
S
L
E
L
V
F
S
H
G
V
A
V
V
A
R
L
A
E
R
A
V
V
Y
R
DL
V
M
A
G
R
S
HNVA
A
Q
A
T
T
L
G
K
R
F
A
S
A
A
E
E
T
L
V
A
L
T
R
L
R
E
L
I
D
R
YPLRGVKGPMGTA
Q
D
M
L
D
L
F
GGD
V
G
K
L
A
D
L
E
R
R
V
A
E
F
L
GFTEVFTSVGQVYPR
S
L
D
H
D
V
L
S
A
L
V
Q
F
G
A
G
P
S
S
M
A
H
T
I
R
L
M
A
G
H
ELVTEGFAPG
Q
V
G
S
S
AMPHKMNT
R
S
C
E
R
V
N
G
L
Q
V
V
L
R
G
Y
A
S
M
A
A
E
L
AGAQWNEGDVFC
S
V
V
R
R
V
A
L
P
D
A
F
F
A
I
D
G
Q
T
E
T
F
L
T
V
L
D
E
F
G
A
Y
P
A
V
I
Q
R
E
L
D
R
Y
LPFLA
T
T
R
I
L
M
A
A
V
R
A
GVG
R
E
A
A
H
E
V
I
K
E
H
A
V
A
V
A
L
A
M
R
E
QGREPD
L
I
D
R
L
A
G
DPRLPLD
K
V
A
L
E
A
A
L
ED
K
Q
A
F
T
GA
A
G
D
Q
V
D
G
V
V
A
A
V
G
E
L
V
S
R
Y
PEAAKYTSG
1
HHSearch
52.89
26%
31
- C1 -
-
3HE5
-
?
E:
[4-46]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
----
Q
L
E
N
E
V
A
S
-
L
E
N
E
N
E
T
L
K
--------------
K
K
-----
N
L
--
H
K
K
D
L
I
A
Y
-
L
E
K
E
I
A
N
L
R
K
K
I
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
29
Fugue
52.87
13%
-
- C- -
-
4WY4
-
?
D:
[194-258]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------H
L
R
A
Y
H
Q
K
I
D
S
N
L
-----
D
----
E
L
S
M
G
L
G
R
-
L
K
D
I
A
L
G
M
Q
------------
T
E
I
E
E
Q
D
D
I
L
D
--
R
L
T
T
K
V
D
K
-
L
D
V
N
I
K
S
T
E
R
K
V
R
Q
L--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
52.86
13%
-207
- C1 -
-
3H0R
-
GATC_AQUAE
X:
[4-41]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
R
E
W
V
L
K
-
I
A
K
L
A
R
L
E
L
------------
K
E
E
E
-----
I
E
--
V
F
Q
K
Q
L
S
D
-
I
L
D
F
I
D
Q
L
K
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
HHSearch
49.99
13%
64
- C1 -
-
5IWI
-
GYRA_STAAN (first)
A:
[402-459]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
T
D
K
V
A
M
E
S
L
-----
Q
Q
R
F
K
L
S
E
K
Q
A
Q
A
-
I
L
D
M
R
L
R
R
L
------------
T
G
L
E
-----
R
D
--
K
I
E
A
E
Y
N
E
-
L
L
N
Y
I
S
E
L
E
T
I
L
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------