@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : B0VVB1: (2017-12-23 )
MHYSRLKLTVQTPLKLKDLTYKFVVTNNSTKKKTEFEGRFDDQGLTGWTEIYNLNTSLIYEVYLRGEILQKIAVKAYPNKKTHSVFTIKVTSEITKNVKENIKEIYLNDGEVAWYLIKKTETMLDWSKRVFKKPLNVSDWDTLKANNPHIPNMAPIRLLSPGMVVVLSNSTTAKELPRYKKEAQEAQKRLEEMKKDKDFDAEFFAQNYEFFYDALNDSRTEITNENIFTNNDHPLIYQLDGSENESGVAWGSIGKGGIDATLAFHEGTVTRMNQIHGELALKMAEERAKGSGLANPKNFKAFRQKYKDLYKALDHEYSKGVFKWDRSIKTNNMRRIINQSSLARGVTYKGGMKEYVEKMGELGKMSKVIKGGGYLFLALDIYNASDAIANAKPEEKAKTAVVETSKIAGGLAGGAVGAFIVLTVATGGTSLIVLGVAAGASALVGWAGGEVGGYLGKEGYELISK
Atome Classification :
(20 SA)
.........10........20........30........40........50........60........70........80........90........100.......110.......120.......130.--......140.......150.......160.......170.......180.......190.-......200.-......210.......220.......230.......240.......250---.....-----..260.......270.......280.--.......290.......300.......310.......320.......330.......340.......350.......360........370-.......380----------.......--.390....---...400...----.....-410.......420.......430.......440.......450.......460...
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
MH
Y
S
R
L
K
L
T
VQTPLKLKD
L
T
Y
K
F
V
VTNNSTKKKTEFEGRFDDQGLTG
W
T
E
IYNL
N
T
S
L
I
Y
E
V
Y
L
R
G
E
I
L
Q
K
I
A
V
KAYPNKK
T
H
S
V
F
T
I
K
V
T
S
E
I
T
K
N
V
K
E
N
I
K
E
IYLNDG
E
V
A
W
Y
L
I
KK
T
E
T
M
L
D
W
S
K
R
V
F
KK--PLNVSDWDTLKANNPHIPNMA
P
I
R
LLSP
G
M
V
V
V
LSNST
T
A
K
E
L
P
R
Y
K
K
E
A
Q
E
A
Q
K
R
L
E
E
M
-KKDKDF
D
A
E
F
-
F
A
Q
N
Y
E
F
F
Y
D
A
LNDSRTEITNENIFTNNDH
P
L
I
Y
Q
LDGSENESGVAWGS---IGKGG-----
I
D
A
T
L
A
FHEG
T
V
T
R
M
N
Q
I
H
G
E
L
A
-
L
K
--
M
A
E
E
RAKGSGLAN
P
K
N
F
K
A
F
R
Q
K
Y
K
D
L
Y
K
A
L
D
H
E
YSKG
V
F
K
WDRSIK
T
N
N
M
R
R
I
I
N
Q
S
S
LARGVTYKG
G
M
K
E
Y
V
E
K
M
G
E
-
L
G
K
M
S
K
V
IKGG-
G
Y
L
F
L
A
L
D
I-----------YNASDAI--ANAK
P
E
E
K---A
K
T
A
V
-
V
E
T
----
S
K
IAG-GLAGGA
V
G
A
F
I
V
L
T
V
ATGG
T
S
L
I
V
L
G
VAAGAS
A
L
V
GWAGGEVGGYLGK
E
G
Y
E
L
ISK
26
Fugue
66.05
14%
7
- C2 -
-
1G99
1
ACKA_METTE
A:
[1-398]
M
K
V
L
V
I
N
A
G
S
S
S
------
L
K
Y
Q
L
I
D
M
T
N
E
S
A
L
A
V
G
L
C
E
R
I
G
I
D
N
S
I
I
T
Q
K
K
F
D
G
K
K
L
E
K
L
T
D
L
P
T
H
K
D
A
L
E
E
V
V
K
A
L
T
D
D
E
F
G
V
I
K
D
M
G
E
I
N
A
V
G
H
R
V
--------
V
H
G
G
E
K
F
T
T
S
A
L
Y
D
E
G
V
E
K
A
I
K
D
C
F
E
L
AP
L
H
N
P
P
N
M
M
G
I
S
A
C
A
E
I
M
P
G
--------
T
P
M
V
I
V
F
-
D
T
A
F
H
Q
T
M
P
P
Y
A
Y
M
Y
A
L
P
Y
D
L
Y
E
K
H
-
G
V
R
K
---
Y
G
F
-
H
G
T
S
H
K
Y
V
A
E
R
A
A
L
M
L
--------------------
G
K
P
A
E
E
T
K
I
I
T
C
H
---
L
G
N
G
-------
S
S
I
T
A
V
E
G
G
K
S
V
E
T
S
M
G
F
T
P
L
E
G
L
A
--
M
G
----
T
R
C
G
S
I
D
P
A
I
V
P
F
L
M
E
K
E
G
L
T
T
R
E
I
D
T
L
M
N
K
K
S
G
V
L
G
V
S
G
L
S
N
D
F
R
D
L
D
E
A
A
S
-
K
G
N
R
K
A
E
L
A
L
E
I
F
A
Y
K
V
K
K
F
I
G
E
Y
S
A
V
L
N
G
A
-
D
A
V
V
F
T
A
G
I
-----------
G
E
N
S
A
S
I
--
R
K
R
I
L
T
G
L
---
D
G
I
G
I
K
I
D
D
----
E
K
N
K
I
-
R
------
G
Q
E
I
D
I
S
T
P
D
A
K
V
R
V
F
V
I
P
T
-------------
N
E
E
L
A
I
A
R
E
T
K
E
I
V
E
T
2
PsiBlast_PDB
48.30
39%
-265
- C3 -
-
1VPV
1
Y1468_THEMA
A:
[155-187]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
E
V
L
K
K
L
D
E
R
-
M
K
N
K
D
F
K
A
I
F
-
Y
V
S
N
F
D
Y
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
PsiBlast_PDB
44.53
28%
-22
- C3 -
-
5O5J
-
?
E:
[36-136]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
I
E
R
V
V
S
-
I
N
R
V
S
K
V
V
K
G
G
R
R
F
S
F
T
A
L
V
I
VGDGKGMVGVG
Y
G
K
A
K
E
V
PA
A
I
A
K
G
V
E
E
---
A
R
K
N
F
-
F
R
V
PLIG
S
T
I
T
H
-
P
V
Q
G
E
A
A
A
G
V
V
M
L
R
P
A
S
P
G
T
G
V
I
A
G
G
A
A
----------------------------
12
HHSearch
42.27
15%
-13
- C3 -
-
1COL
-
CEA_ECOLX
B:
[98-150]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
N
L
S
K
A
F
K
V
----
A
D
V
V
M
K
V
-----------
E
K
V
R
E
K
S
--
I
E
G
Y
E
T
G
N
---
W
G
P
L
M
-
L
E
V
----
E
S
W
V
L
S
G
I
A
S
S
V
A
-------------------------------------------------
24
Fugue
39.73
19%
-25
- C3 -
-
5J9T
-
EAF6_YEAST
B:
[1-109]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
T
D
E
L
K
S
Y
E
A
L
K
A
E
L
K
K
S
L
Q
D
R
-
R
E
Q
E
D
T
F
D
N
L
-
Q
Q
E
I
Y
D
K
E
T
E
Y
F
S
S
G
N
I
-
I
K
G
F
D
A
F
N
N
N
D
R
--
I
F
S
L
S
S
A
T
Y
V
K
Q
Q
H
G
Q
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
39.25
20%
-122
- C3 -
-
2I88
-
CEA1_ECOLX
A:
[428-478]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
D
Q
F
A
K
Y
L
K
I
T
-
G
H
V
---
S
F
G
-----------
Y
D
V
V
S
D
I
--
L
K
I
K
D
T
G
D
---
W
K
P
L
F
-
L
T
L
----
E
K
K
A
A
-
D
A
G
V
S
Y
--------------------------------------------------
29
Fugue
37.98
25%
74
- C3 -
-
5B52
-
?
A:
[4-60]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
A
E
F
A
A
A
E
K
A
L
Q
E
Q
M
A
Q
L
E
A
L
-
K
K
D
A
G
L
K
R
E
I
E
F
E
Q
K
L
V
G
L
M
K
S
Y
D
K
S
L
R
D
I
I
A
I
L
D
P
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
27
Fugue
37.86
15%
109
* C3 *
-
2AKF
-
COR1A_MOUSE
A:
[1-32]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
R
L
E
E
D
V
R
N
L
N
A
I
V
Q
K
L
Q
E
R
L
D
R
L
-
E
E
T
V
Q
A
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
30
Fugue
36.52
8%
64
- C3 -
-
1B9P
-
A:
[1-34]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
A
V
E
L
R
S
P
G
I
S
R
F
R
R
K
I
A
K
R
S
I
K
T
L
E
H
-
K
R
E
N
A
K
E
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
HHSearch
35.05
0%
-212
- C3 -
-
3FEW
-
?
X:
[356-367]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
L
N
K
V
L
S
N
P
G
F
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
13
HHSearch
33.58
12%
7
- C3 -
-
3FEW
-
?
X:
[393-442]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
G
N
I
S
K
A
F
K
F
A
-
D
---
V
V
M
K
V
-----------
E
K
V
R
E
K
S
--
I
E
G
Y
E
T
G
N
---
W
G
P
L
M
-
L
E
V
----
E
S
W
V
L
-
S
G
I
A
S
---------------------------------------------------
1
PsiBlast_PDB
33.11
32%
9
- C1 -
-
2DV6
-
?
A:
[26-95]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
P
V
V
F
T
L
-----
R
T
G
I
A
E
G
R
M
V
Y
I
G
V
G
G
DIDHK
I
N
P
T
L
V
V
H
E
G
E
T
V
Q
V
N
L
V
N
G
E
G
A
-
Q
H
D
V
V
V
D
Q
Y
A
A
R
S
A
I
V
N
G
K
N
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
33.02
22%
50
- C3 -
-
3HE4
-
?
B:
[1-44]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
N
T
V
K
E
L
K
N
Y
I
Q
E
L
E
E
R
N
A
E
L
K
N
L
-
K
E
H
L
K
F
A
K
A
E
-
L
E
F
E
L
A
A
H
K
F
E
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
25
Fugue
32.50
34%
42
- C3 -
-
2KET
-
A:
[1-26]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
R
F
K
R
F
R
K
K
F
K
K
L
F
K
K
L
S
P
V
I
P
L
L
H
L
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
31.61
23%
-71
- C3 -
-
1CII
-
CEIA_ECOLX
A:
[532-583]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
N
R
F
S
R
G
---
L
-
G
Y
A
G
K
F
T
S
L
-----------
A
D
W
I
T
E
F
--
G
K
A
V
R
T
E
N
---
W
R
P
L
F
-
V
K
T
----
E
T
I
I
A
-
G
N
A
A
T
A
L
-------------------------------------------------
19
HHSearch
30.72
0%
-59
- C3 -
-
1COL
-
CEA_ECOLX
B:
[61-72]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
S
L
N
K
I
T
A
N
P
A
M
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
HHSearch
30.35
24%
76
- C3 -
-
4R04
-
TOXA_CLODI
A:
[1034-1065]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
S
T
I
L
D
G
-----------
I
N
L
G
A
A
I
--
K
E
L
L
D
E
H
D
P
L
L
K
K
E
L
E
-
A
K
-------------------------------------------------------------------
14
HHSearch
30.29
15%
11
- C3 -
-
1A87
-
CEAN_ECOLX
A:
[282-329]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
I
G
N
L
G
K
A
F
K
V
----
A
D
L
A
I
K
V
-----------
E
K
I
R
E
K
S
--
I
E
G
Y
N
T
G
N
---
W
G
P
L
L
-
L
E
V
----
E
S
W
I
I
-
G
G
V
-----------------------------------------------------
28
Fugue
30.21
32%
130
- C3 -
-
2ND2
-
?
A:
[1-44]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
P
C
E
D
L
K
E
R
L
K
K
L
G
M
S
E
E
C
R
Q
R
L
E
K
M
C
K
E
G
T
S
E
D
A
E
R
-
M
A
R
N
C
E
S
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
PsiBlast_PDB
28.43
36%
45
- C3 -
-
5KDU
3
?
A:
[306-341]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
F
F
E
S
K
Y
K
T
K
T
R
I
T
D
Q
N
I
W
E
N
N
T
Y
P
K
V
G
L
D
D
Y
S
N
N
E
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------