@TOME V2.3
(Mar 2018)
Ref.
-
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Doc.
Global output mode :
Sort entries by :
Atome Result
Tools Result
PDB occurence
Core Structure Cluster
Sequence Color type :
Secondary Structure
Hydrophobicity
Disulfide Bonds
TCoffee Identity Score
Uniprot annotation
Core Structure Cluster
Contacts with Ligands
Show alignment :
Atome selection
All alignments
Only Template with Ligand
Column output:
Score:
Atome Rank Value
Tools Score
Hide column
Alignment:
Sequence Identity (%)
Tcoffee Alignment Score
Hide column
3D Common Core:
Tito PKB Score
Verify3D Score
QMean Score
Hide column
Structural Clustering:
Cluster Num
3D-Jury Struct. Score
Hide column
Modeller Result :
Model Rank
QMean Score
Dfire Score
Dope Score
Errat Score
Verify3D Score
Modeller Score
Hide column
Complexes Modeling
Show Ligands of Templates
Complexes Affinity Score
Main Binding Site Identity
Hide column
Templates Information:
Uniprot entry
Cath class
Scop class
Smart class
Prosite class
Pfam class
EC Number
Taxonomy
Experiment Method
Hide column
Sequence & Result Tab:
PDB Template Sequence
Complexes Tab
Values color: [
Good
|
Correct
|
Middling
|
Bad
]
Sequence color :
Mutated
Helix
Strand
Conserved
Query sequence : I3TYU3: (2017-12-15 )
MFRRYPYRDSSNSEEKRRKNMKYFQLVLTLITAMVIEVLEQKLA
Atome Classification :
(20 SA)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------.........10-...---..------...20-.-........30........40...----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
(Atome)
(Ident)
(Tito)
(Num)
(QMean)
(Ligand)
(Uniprot)
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------MFRRYPYRDSS-
N
S
E
---
E
K
------
R
R
K
N
--
M
-
K
Y
F
Q
L
V
L
T
L
I
T
A
M
V
I
E
V
L
E
Q
KLA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
14
HHSearch
76.39
29%
-
- C6 -
-
4DDP
-
BECN1_HUMAN
A:
[413-447]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
S
I
K
T
Q
F
-
N
S
E
---
E
Q
------
W
T
K
A
--
L
-
K
F
M
L
T
N
L
K
W
G
L
A
W
V
S
S
Q
F
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
18
Fugue
67.34
24%
-58
- C6 -
-
1JFA
2
TRI5_FUSSP
A:
[1-354]
-----------------------------------------------------------------------------------------------------------------------------------------------------------MENFP
T
E
Y
F
L
N
T
T
V
R
L
L
E
Y
I
R
Y
R
D
S
N
-
Y
T
R
---
E
E
------
R
I
E
N
--
L
-
H
Y
---
A
Y
N
K
A
A
H
H
F
A
Q
P
R
Q
Q
Q
L
L
KVD
P
K
R
L
Q
A
S
L
Q
T
I
V
G
M
V
V
Y
S
W
AKVS
K
E
C
M
A
D
L
S
I
H
Y
T
Y
T
L
V
L
D
D
SKDDPYPTMVN
Y
F
D
D
L
Q
A
GREQAH
P
W
W
A
L
V
N
E
H
F
P
N
V
L
R
H
F
G
P
F
C
S
L
N
L
I
R
S
T
L
D
F
F
E
G
C
W
I
E
Q
Y
NFGGFPGSHD
Y
P
Q
F
L
R
R
M
N
GL
G
H
C
V
G
A
S
LWPKEQFNERSL
F
L
E
I
T
S
A
I
A
Q
M
E
N
W
M
V
W
V
N
D
L
M
S
FYKEFDDERDQIS
L
V
K
N
Y
V
V
S
DEIS
L
H
E
A
L
E
K
L
T
Q
D
T
L
H
S
S
K
Q
M
V
A
V
FSDKD
P
Q
V
M
D
T
I
E
C
F
M
H
G
Y
V
T
W
H
L
C
DRRYRL
S
E
I
Y
E
K
V
K
EEKT
E
D
A
Q
K
F
C
K
F
Y
E
Q
A
A
N
V
GAVSPSEWAYPP
V
A
Q
L
A
N
V
16
Fugue
57.35
18%
-7
* C4 *
-
4D10
-
CSN5_HUMAN
E:
[24-333]
---------SIDEIYKYD
K
K
Q
Q
Q
E
I
L
A
A
KPWTKDHHYFK
Y
C
K
I
S
A
L
A
L
L
K
M
V
M
H
A
R
S
G
GN
L
E
V
M
G
L
M
L
G
K
V
D
GE
T
M
I
I
M
D
S
F
A
L
PVEGTETRVNAQAAA
Y
E
Y
M
A
A
Y
I
E
N
A
K
Q
V
GRLENAI
G
W
Y
H
S
HPGY
G
C
W
L
S
G
I
D
V
S
T
Q
M
L
N
Q
Q
FQEP
F
V
A
V
V
I
D
P
T
R
T
I
S
A
G
K
V
N
L
G
A
F
R
T
Y
P
K
G
Y
K
P
-
P
D
E
---
G
P
SE
Y
Q
T
I
P
L
N
K
--
I
-
E
D
F
G
V
H
C
K
Q
Y
Y
A
L
E
V
S
Y
F
K
S
S
L
D
R
K
L
L
E
L
L
W
N
KY
W
V
N
T
L
S
SSSLLTN
A
D
Y
T
T
G
Q
V
F
D
L
S
E
K
L
E
Q
S
E
A
Q
L
GRGSED
K
L
A
K
A
T
R
D
S
C
K
T
T
I
E
A
I
H
G
L
M
S
Q
V
I
K
D
K
L
FNQINI-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
11
HHSearch
55.71
25%
57
- C7 -
-
5H5P
-
?
A:
[130-165]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
V
G
R
L
H
F
S
E
T
T
A
N
N
M
RKK
G
K
------
P
N
P
D
--
Q
-
R
Y
F
M
L
V
V
A
L
Q
A
H
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
22
Fugue
51.66
25%
146
- C4 -
-
2MXM
-
HPR3_THRPR
A:
[1-33]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------DCLKF
G
W
K
C
N
P
R
N
D
K
C
-
C
S
G
---
L
K
------
C
G
S
N
--
H
-
N
W
C
K
L
H
L
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
2
HHSearch
51.60
38%
62
- C6 -
-
4A63
-
P73_HUMAN
C:
[187-208]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
C
P
G
R
D
R
K
-
A
D
E
---
D
H
------
Y
R
E
A
--
E
N
L
Y
F
Q
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
4
HHSearch
51.31
24%
-79
* C7 *
-
1M6U
-
NDT80_YEAST
A:
[194-224]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Y
E
R
V
Q
F
A
S
S
I
-
S
V
-----
K
-------
K
P
F
QQ
N
-
K
H
F
S
L
H
V
I
L
G
A
V
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
8
HHSearch
48.03
44%
-313
- C6 -
-
5KKO
-
?
C:
[3-18]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
M
-
K
Y
F
Q
I
D
E
L
T
L
N
A
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
7
HHSearch
46.41
44%
-302
- C6 -
-
5KKO
-
?
E:
[3-18]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
--
M
-
K
Y
F
Q
I
D
E
L
T
L
N
A
M
L
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
20
Fugue
45.17
12%
66
* C6 *
-
3CMN
-
?
A:
[43-395]
LID
W
E
Q
A
R
Q
A
A
L
R
L
S
QWEQAPVDN
R
A
F
R
R
E
Q
Y
A
R
M
V
A
L
S
E
P
L
I
A
D
Y
L
GVRLPEPVS
R
I
F
V
F
D
R
R
E
W
L
E
A
N
I
V
S
F
S
Q
L
F
R
P
I
E
E
M
Y
E
KS
S
K
L
L
G
V
Q
I
G
G
L
L
G
Y
L
A
Q
R
VLGQYDLSLLSAGG
S
L
Y
F
V
E
P
N
I
A
R
V
Q
Q
Q
L
GLS
D
E
D
F
R
L
W
I
T
L
H
E
M
T
H
A
F
E
F
EAYPW
V
R
T
Y
F
R
E
L
L
E
Q
N
F
A
L
T
---------
P
E
------
Q
R
A
V
--
F
-
D
R
I
Q
A
L
M
S
L
I
E
G
Y
G
N
H
V
M
N
A
V
G
R
RLLPS
F
N
Q
I
E
Q
Q
I
A
Q
R
Q
R
Q
R
T
M
L
D
Q
M
V
F
R
L
T
GLD
L
K
L
A
Q
Y
QQ
G
E
A
F
V
N
A
V
V
A
A
RG
I
Q
F
A
S
RVWERPENLPS
M
D
E
I
R
N
P
G
Q
W
I
V
R
M
D
R
EG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
10
HHSearch
43.13
24%
0
- C- -
-
1MNN
2
NDT80_YEAST
A:
[253-288]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
E
R
V
Q
F
A
S
S
I
-
S
V
----
K
K
------
P
S
Q
Q
--
N
-
K
H
F
S
L
H
V
I
L
G
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
5
HHSearch
42.11
23%
-247
- C6 -
-
2P06
-
Y060_ARCFU
A:
[22-45]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
-
D
Y
F
R
L
A
E
K
F
L
R
E
M
H
A
K
Y
M
K
R
V
S
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
23
Fugue
41.24
20%
-83
- C5 -
-
5MQF
-
SRRM2_HUMAN
S:
[1-30]
--------------------------------------------------------------------------------------------------------------------------------------------------------------------------
M
Y
N
G
I
G
L
P
T
P
R
-
G
S
G
---
T
N
--------------
G
Y
V
Q
R
N
L
S
L
V
R
G
R
R
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
6
HHSearch
40.96
23%
-239
- C6 -
-
2P06
1
Y060_ARCFU
B:
[17-45]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
L
------
Y
F
Q
G
--
M
-
D
Y
F
R
L
A
E
K
F
L
R
E
M
H
A
K
Y
M
K
R
V
S
R
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
1
HHSearch
39.25
44%
-42
- C1 -
-
2I6H
-
?
A:
[176-184]
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------
F
G
R
F
P
H
R
N
G
---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
21
Fugue
38.90
23%
331
- C6 -
-
2YLE
-
B:
[9-29]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------
S
L
Y
K
I
K
P
R
H
-
D
S
G
---
I
K
------
A
K
I
S
--
M
-
K
T
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
19
Fugue
38.80
23%
176
* C5 *
-
5BRM
-
STK3_HUMAN
G:
[7-28]
------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
G
M
K
R
N
A
T
-
S
P
Q
---
V
Q
------
R
P
S
F
--
M
-
D
Y
F
D
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
17
Fugue
38.32
16%
135
- C3 -
-
4DPG
-
AIMP2_HUMAN
I:
[2-32]
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------P
M
Y
Q
V
K
P
Y
H
G
G
G
-
A
P
L
---
R
V
------
E
L
P
T
--
C
-
M
Y
--------------
R
L
P
N
V
H
G
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
15
Fugue
32.38
19%
-162
- C2 -
-
2M8V
-
?
A:
[1-33]
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
A
---
D
R
------
G
W
I
K
--
L
-
K
D
C
P
N
V
I
S
S
I
C
A
G
T
I
I
T
A
C
K
N
C
A
----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
12
HHSearch
31.74
20%
105
- C6 -
-
1V5K
-
MARE1_MOUSE
A:
[57-76]
-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
Q
A
-
K
L
E
---
H
E
------
Y
I
Q
N
--
F
-
K
I
L
Q
A
G
F
K
-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------