@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VKP5: (2017-10-27 )
MQIFYDKDCDLSIIQSKKVAIIGYGSQGHAHALNLKDSGVDVTVGLRAGSASWKKAENAGLKVAEVPAAVKQADLVMILTPDEFQSQLYRDVIEPNIKEGATLAFAHGFSVLYNQVVPRKDLDVIMVAPKAPGHTVRSEFQRGSGVPDLIAIHQDASGNARNVALSYASGVGGGRTGIIETSFREETETDLFGEQAVLCGGAVELVKMGFETLVEAGYAPEMAYFECLHELKLIVDLMFEGGIADMNYSVSNNAEYGEYVTGPEVINEQSREAMRNALKRIQSGEYAKMFIQEGALNYPSMTARRRQNAAHGIEQTGAKLRAMMPWIQANKIVDKEKN

Atome Classification :

(25 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_B_9(4KQW)
ILVC_SLAES
[Raw transfer]




NAP_B_9(4KQW)
ILVC_SLAES
[Raw transfer]




NAP_A_3(4KQW)
ILVC_SLAES
[Raw transfer]




NAD_B_10(4KQX)
ILVC_SLAES
[Raw transfer]




NDP_A_6(4TSK)
ILVC_ALIAD
[Raw transfer]




NAD_B_10(4KQX)
ILVC_SLAES
[Raw transfer]




NDP_A_6(4TSK)
ILVC_ALIAD
[Raw transfer]




NDP_B_11(4XDZ)
ILVC_IGNAA
[Raw transfer]




NAD_A_3(4KQX)
ILVC_SLAES
[Raw transfer]




NAI_B_12(4XDY)
ILVC_UNCAG
[Raw transfer]




NAI_A_5(4XDY)
ILVC_UNCAG
[Raw transfer]




HIO_B_9(4KQX)
ILVC_SLAES
[Raw transfer]




HIO_B_9(4XDY)
ILVC_UNCAG
[Raw transfer]




HIO_A_4(4KQX)
ILVC_SLAES
[Raw transfer]




HIO_A_8(4XDY)
ILVC_UNCAG
[Raw transfer]




HIO_A_8(4XDY)
ILVC_UNCAG
[Raw transfer]




40E_B_14(4XDZ)
ILVC_IGNAA
[Raw transfer]




40E_B_14(4XDZ)
ILVC_IGNAA
[Raw transfer]




PEG_B_10(3FR8)
ILV5_ORYSJ
[Raw transfer]




PE4_A_6(3FR8)
ILV5_ORYSJ
[Raw transfer]




50 HHSearch 91.8484%-113 - C2 -4XIY - ILVC_AZOVD -
21 PsiBlast_CBE 91.5883%-113 - C2 -4XIY - ILVC_AZOVD -
22 PsiBlast_CBE 91.3783%-117 - C2 -4XIY - ILVC_AZOVD -
48 HHSearch 91.2084%-108 - C2 -1NP3 - ILVC_PSEAE -
38 Fugue 90.9583%-108 - C2 -1NP3 - ILVC_PSEAE -
1 PsiBlast_PDB 90.8483%-108 - C2 -1NP3 - ILVC_PSEAE -
23 PsiBlast_CBE 89.6183%-108 - C2 -4XIY - ILVC_AZOVD -
25 PsiBlast_CBE 89.5259%-113 - C2 -4KQX 9.3 ILVC_SLAES
2 PsiBlast_PDB 88.4760%-115 - C2 -4KQW 10.0 ILVC_SLAES
58 HHSearch 83.2359%-112 - C2 -4KQX 9.3 ILVC_SLAES
4 PsiBlast_PDB 82.6756%-112 - C2 -4TSK 10.5 ILVC_ALIAD
55 HHSearch 81.8455%-112 - C2 -4TSK 9.9 ILVC_ALIAD
57 HHSearch 81.7660%-113 - C2 -4KQW 10.0 ILVC_SLAES
24 PsiBlast_CBE 81.6860%-113 - C2 -4KQW 10.0 ILVC_SLAES
3 PsiBlast_PDB 81.5659%-110 - C2 -4KQX 8.4 ILVC_SLAES
8 PsiBlast_PDB 79.0546%-118 - C2 -4XDZ - ILVC_IGNAA -
28 PsiBlast_CBE 78.3246%-112 - C2 -4XDZ 9.1 ILVC_IGNAA
51 HHSearch 74.0146% -67 - C2 -4XDZ 3.5 ILVC_IGNAA
5 PsiBlast_PDB 73.5954% -41 - C2 -4YPO - ILVC_MYCTU -
56 HHSearch 72.2654% -27 - C2 -4YPO - ILVC_MYCTU -
27 PsiBlast_CBE 67.2146% 1 - C2 -4XDY 8.7 ILVC_UNCAG
6 PsiBlast_PDB 66.1546% -0 - C2 -4XDY 8.6 ILVC_UNCAG
54 HHSearch 63.6346% 19 * C2 *4XDY 3.5 ILVC_UNCAG
37 PsiBlast_CBE 45.9833% 7 - C2 -3FR8 3.0 ILV5_ORYSJ
15 PsiBlast_PDB 45.1633% 10 - C2 -3FR8 2.7 ILV5_ORYSJ