@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQU3: (2017-11-29 )
MTRTANEFLTPQAIKVEAVSGTSAKVILEPLERGFGHTLGNALRRILLSSLPGAAVVEVEIEGVEHEYSTLEGLQQDIVELLLNLKGLSIKLFDQNEAYLTLEKQGPGDITAADLRLPHNVEVVNPEHLIGTLSATGSLKMRLKVSQGRGYETSDSRFPEGETRPVGRLQLDASYSPIKRVSYTVENARVEQRTDLDKLVIDLETNGTVDPEEAIRKAATILQQQIAIFVDLQKDQTPVAQEPREEVDPILLRPVDDLELTVRSANCLKAENIYYIGDLVQRTEVELLKTPNLGKKSLTEIKDVLASKGLQLGMRLENWPPASLRMDDRFAYRSR

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NACID_M_5(3N97)

[Raw transfer]
-
NACID_E_5(3N4M)

[Raw transfer]
-
NACID_J_3(1LB2)

[Raw transfer]
-
NACID_M_5(3N97)
RPOA_ECOLI
[Raw transfer]
-
NACID_E_5(3N4M)
RPOA_ECOLI
[Raw transfer]
-
NACID_E_4(5CIZ)

[Raw transfer]
-
NACID_J_3(1LB2)
RPOA_ECOLI
[Raw transfer]
-
4 PsiBlast_PDB 80.3966% -7 - C1 -4JK2 - RPOA_ECOLI -
3 PsiBlast_PDB 78.9466% -3 - C1 -4JK1 - RPOA_ECOLI -
8 PsiBlast_PDB 78.8266% -6 - C1 -4KN7 - RPOA_ECOLI -
15 PsiBlast_PDB 78.0566% -7 - C1 -5EZK - RPOA_ECOLI -
7 PsiBlast_PDB 77.6566% -4 - C1 -4KN4 - RPOA_ECOLI -
6 PsiBlast_PDB 76.5066% -4 - C1 -4KMU - RPOA_ECOLI -
13 PsiBlast_PDB 75.6366% -1 - C1 -4YG2 - RPOA_ECOLI -
10 PsiBlast_PDB 74.1166% -1 - C1 -4YFK - RPOA_ECO24 -
19 PsiBlast_PDB 73.1966% 0 - C1 -5UAQ - RPOA_ECOLI -
14 PsiBlast_PDB 70.6966% 2 * C1 *5BYH - RPOA_ECOLI -
1 PsiBlast_PDB 69.1166% -5 - C1 -3IYD - RPOA_ECOLI -
5 PsiBlast_PDB 63.5866% -37 - C1 -4JKR - ? -
80 HHSearch 62.5961% -36 - C1 -1BDF - RPOA_ECOLI -
23 PsiBlast_CBE 62.0160% 0 - C- -4YLN - RPOA_ECOLI -
22 PsiBlast_CBE 62.0160% 0 - C- -4YLO - RPOA_ECOLI -
21 PsiBlast_CBE 62.0160% 0 - C- -4YLP - RPOA_ECOLI -
9 PsiBlast_PDB 61.4266% -31 - C1 -4S20 - RPOA_ECOLI -
78 HHSearch 59.4842% -89 - C1 -5TW1 - RPOA_MYCS2 -
16 PsiBlast_PDB 59.3166% -26 - C1 -5UAH - RPOA_ECOLI -
11 PsiBlast_PDB 58.8466% -28 - C1 -4YFN - RPOA_ECO24 -
73 PsiBlast_CBE 49.4890%-193 - C1 -3N4M 2.7 RPOA_ECOLI
72 PsiBlast_CBE 47.4090%-196 - C1 -3N4M 2.3
75 PsiBlast_CBE 44.6990%-180 - C1 -1LB2 2.5 RPOA_ECOLI
69 PsiBlast_CBE 43.8790%-176 - C1 -5CIZ 3.9
71 PsiBlast_CBE 43.5390%-166 - C1 -3N97 2.5 RPOA_ECOLI
70 PsiBlast_CBE 43.4390%-174 - C1 -3N97 2.3
74 PsiBlast_CBE 37.4090%-160 - C1 -1LB2 3.9