@TOME V2.3
(Mar 2018)

Ref. - - Doc.
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Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LinJ_07_0770: (2018-03-08 )
MSSGPLRMPTPSAPSTPPPPTATQHHHTSSWRSWGTKGTGQRVAEGGGSTTTGSPNSSAAPPSVSVTVVVLAALTAATVSVAYNSYKVRSRSSRVYRSQSTTPGHSCTRHGEASDPSHTGDIAMDSVKTASPLSPSTARSDATTCCRSTSLGGCGSTAAHTVAGENPSSTAASENELDEGGQRERDVMAQSPSLALHTDTAADAGARSGNRDMRFALCSAPPLQMAHDSTAEFHDRCATPAASAAPSPPPPETPKALLSNYYDLEPYALQGLAGGAHGWKRVFGLLKPEMRRRSGRDEACAEDGGTAADGIPGRRAPGSLTRTYDGSRVTTTDSPALLRESPGAIVPVTPAAATRSPTRRASAVESMYRSSVVKSDVSVHSRVPGQPVATGKPCTARWYGDDHKLFSVAAASSTSASTLAQPLHPPRLSVSPVAGVPSPPSRFLNSFFFPVLQHLSFCVSRSVGSGPGESTTTGEATSGTAGSGVHTASTTNTFATSAALAVAQRNLQRDISTLVATTASVRLGASASSSFPGSHAHTARCSAVSSVAVSPRAGATGSCRSQQQHEGVTAAESCSSFAALHAGRSSSGGQRRKGVSVEGEEGAAQHVLGSHARFLSAEDKQQPGMRGSPRHQSSGACRQTPASSQKSDRSATWSGAGPCKQSIRESAQERRMPPHPSPRAAATAAGATADSGAVPAPPEASSTEEPNAAGTESVGEPASPPTMAHCCTIAEQLAVLTSRREQQHRYTQQLQASRRSAGLGAGAENALPSPLATPSSPAYTGAAAASTTLDVSNAELSKKASGMRSPFAWASQYYTDTASGVFYSSVLQPHHYENHVYSDVTTEVQQCRRRRQRDRVTSLGAGVTPASRAGAEDEDVGHETHTATPMATGAGAATAASTRRSMERPAAESSLTAGLQPAAARKASASAGTAILTSGVGSVAPLSHSKPTQPSNERRVDDLTVKHQDDGSASYTISLTYHDSETGTSRTVNTSALPPLRRCDAGASIPGLSSLSGGTTVRAAARTKRPTTTATLALSASGAASPAHSRSVSGGEAAHAFAVSSPPARPATATMMGKSLLHSQPHQASDAEDNDNASTTLGLAQAARTGGGRPRPAPRSSISVGGSLKYCSSPAAGATAAGSASGSPACDAAAASTTTASGKVNPFAAPLPPTEPQHGPRLRGVAGRNGEMAIGAFLGGGACGKVYECLNTETGQVLAAKQIVFDAKDRKLRTRLKQLELELEVLTLAARHHVRWIVGFFGAEKRGHSVLMYLEYCQHGSLLDYMMEGNSTDAAVWNTSSALDDATPKPSTAPADRSAGCHFDANGSPPVAAVAAWRRHTESVNEDASCLSARSPLRGLREVRESHTEAAAAPKTNSPKQQRQQQQVADGGSAAAGHAQRAEAEEAAATGHASPQVRTHREESAEGEEYPERREGDCLSTAAASVSSAASSVALSSSALDMMPLSEALHPQMPSLSIEQAQCFTKQIVEGLCFLHQHNYAHLDVKTANVLVAADDECRLADLGCAMRLQPPPPASPPPQQQGLAGMDKAVRGGANGDLDDAFSPPPYPVLVDRDAITELRGTALYMAPEMIRFESHAIGSPADVWSLGCVVMEMTTGCAPWRHIAKDKLRVLYRIGSARDELPLPPLIRAWAEEAREWLVREGLSATVDAEKQQDDVAACAMEAGGVAQAPRSRSASKKDREVSGVDRDSGVVGGDLDNAVSDTLDEPCSQRRRVDHGTYGCEATATPRSSSALTAKMPASVRTPATSTRGGTTSSSFARAASAMTAGLQLGESNPPDEERFFREQRHVMRLYVALQDFVTACVRVRPEDRSSTAELLRHPFLTLCKDDI

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EDO_A_5(2WEL)
KCC2D_HUMAN
[Raw transfer]



EDO_A_4(2WEL)
KCC2D_HUMAN
[Raw transfer]
47 Fugue 71.9320% 4 - C1 -4AW2 - MRCKA_RAT -
44 Fugue 65.3821% -15 - C1 -4DN5 - M3K14_HUMAN -
25 HHSearch 64.4826%-103 - C1 -2WEL 3.5 KCC2D_HUMAN
29 HHSearch 63.6425% -40 - C1 -2Y7J - PHKG2_HUMAN -
46 Fugue 62.3618% 44 - C1 -3C4Z - RK_BOVIN -
35 HHSearch 62.1026% -71 - C1 -2X0G - DAPK1_HUMAN -
38 HHSearch 60.5728%-109 - C1 -5IU2 - M3K8_HUMAN -
27 HHSearch 60.5325% -43 - C1 -2Y7J - PHKG2_HUMAN -
26 HHSearch 60.1525%-122 * C1 *3C0I - CSKP_HUMAN -
30 HHSearch 58.8825%-128 - C1 -3C0G - CSKP_HUMAN -
37 HHSearch 58.7624%-130 - C1 -4XBR - INKA1_HUMAN -
21 HHSearch 58.7027%-131 - C1 -2X4F - MYLK4_HUMAN -
40 HHSearch 57.7527% -40 - C1 -5BYZ - MK07_HUMAN -
23 HHSearch 57.2523%-112 - C1 -1TKI - TITIN_HUMAN -
34 HHSearch 55.8624%-128 - C1 -4BGQ - CDKL5_HUMAN -
33 HHSearch 53.0725%-117 - C1 -5J5T - M4K3_HUMAN -
48 Fugue 51.4013% 31 - C1 -4BTF - MLKL_MOUSE -
36 HHSearch 50.3423%-103 - C1 -4NIF - KS6A1_HUMAN -
10 PsiBlast_PDB 50.2725%-144 - C- -5CEN - M3K12_HUMAN -
43 HHSearch 49.0424% 0 - C- -5JZN - DCLK1_HUMAN -