@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : LINJ_17_0770: (2018-07-13 )
MERLQRVGVRTGPTFADAPASTSELPKPTFQPGSSIYEMDSSGRLHRFQCGRVLGRGGFAKCYEVSDETGTYALKAVNRASLEKPKTLQKLHSEISIHRRMKHKHVVEFLRTFRDRYYVYMLLEKCDHGTLMDLLKVRRFSVAETQYVMLQCLSALQYMHSECVIHRDLKPGNIMLDRELNVKIGDFGLAAELQYDGERKRTICGTPNYIAPEIIDHKSHGHSYEVDTWSLGVILYTLLVGQPPFQMEDVESTYKRIRQCRYDFPASVPDNARDLITQILQSSPAHRPTLMDIRQHSFFSSSPPPPLTPPASFASFGLPVPGAAAPATTATASAAAATTITRSARRGPAVDMHHPPPAPYGKELLGAPAQREVLRPINANVPPPPGAPTSPRHLANLRQQQQPTPAPTLPGTCARARSDTPRSAPATAAVPLSGRCPASSPQQLRNDDNADEDEKQQLTALHDRLHQTLCGDAAADDAADNEAPPPPVWVTQCADFSSKYGMAYRLSTGQTGAHFNDSTKIVWEPITDRVEYYARVKIEMPARDGGTGLFAKDERHVFSMHSYPPELEKKVTLTKYFKTYLGRVQSSPDRVPVVACSPFLPAAPPRCTDPHTSSDFVYVKRWLRVDGALVFRLSNKTVQVCFEDGAEIILSSEWRVVTYTTPSGRRRTMPLNSVATEWEEAAERLRNTKSVLYQVIRDHCL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

2FR_A_2(3DBC)
?
[Raw transfer]




664_A_4(4A4O)
PLK1_HUMAN
[Raw transfer]




R78_A_3(2RKU)
PLK1_HUMAN
[Raw transfer]




939_A_4(4A4L)
PLK1_HUMAN
[Raw transfer]




R78_A_3(2RKU)
PLK1_HUMAN
[Raw transfer]




FRS_A_2(3DB6)
?
[Raw transfer]




9ZP_A_2(4B6L)
PLK3_HUMAN
[Raw transfer]




937_A_2(2YAC)
PLK1_HUMAN
[Raw transfer]




3FR_A_2(3DBD)
?
[Raw transfer]




1J3_A_2(4J52)
PLK1_HUMAN
[Raw transfer]




626_A_5(2OWB)
PLK1_HUMAN
[Raw transfer]




79C_A_3(5TA8)
PLK1_HUMAN
[Raw transfer]




IBI_A_2(3FC2)
PLK1_HUMAN
[Raw transfer]




1J4_A_4(4J53)
PLK1_HUMAN
[Raw transfer]




ADP_A_2(3D5W)
?
[Raw transfer]




ANP_A_7(2OU7)
PLK1_HUMAN
[Raw transfer]




GOL_A_11(3FC2)
PLK1_HUMAN
[Raw transfer]




79D_A_2(5TA6)
PLK1_HUMAN
[Raw transfer]




1FR_A_2(3DB8)
?
[Raw transfer]




EDO_A_4(3FC2)
PLK1_HUMAN
[Raw transfer]




EDO_A_6(2X4F)
MYLK4_HUMAN
[Raw transfer]




40 HHSearch 81.0847% -6 * C1 *2RKU 7.6 PLK1_HUMAN
3 PsiBlast_PDB 80.2943% -6 - C1 -2YAC 8.1 PLK1_HUMAN
4 PsiBlast_PDB 79.8343% -8 - C1 -4A4L 7.3 PLK1_HUMAN
7 PsiBlast_PDB 79.6042% -3 - C1 -2OWB 6.1 PLK1_HUMAN
20 PsiBlast_PDB 79.1345% -6 - C1 -3DB6 6.6 ?
8 PsiBlast_PDB 78.3842% -4 - C1 -3FC2 6.4 PLK1_HUMAN
5 PsiBlast_PDB 78.1443% -7 - C1 -4A4O 7.2 PLK1_HUMAN
2 PsiBlast_PDB 78.0445% -6 - C1 -3D5U - ? -
18 PsiBlast_PDB 77.8446% -2 - C1 -4J52 7.5 PLK1_HUMAN
6 PsiBlast_PDB 77.8142% -7 - C1 -2OU7 5.8 PLK1_HUMAN
9 PsiBlast_PDB 77.7342% -7 - C1 -3THB - PLK1_HUMAN -
17 PsiBlast_PDB 77.6746% -3 - C1 -2RKU 7.2 PLK1_HUMAN
12 PsiBlast_PDB 77.6445% -4 - C1 -3D5W 5.3 ?
10 PsiBlast_PDB 77.5246% -7 - C1 -5TA6 8.1 PLK1_HUMAN
19 PsiBlast_PDB 77.4746% -6 - C1 -4J53 7.4 PLK1_HUMAN
32 HHSearch 77.2442% -12 - C1 -4B6L 5.5 PLK3_HUMAN
1 PsiBlast_PDB 76.8247% -6 - C1 -2V5Q - PLK1_HUMAN -
11 PsiBlast_PDB 76.5846% -6 - C1 -5TA8 7.5 PLK1_HUMAN
15 PsiBlast_PDB 71.1445% -15 - C1 -3DBC 6.0 ?
16 PsiBlast_PDB 69.9945% -12 - C1 -3DBD 6.5 ?
14 PsiBlast_PDB 69.8245% -9 - C1 -3DB8 6.3 ?