@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0092: (2017-12-15 )
MNKKLTDYVIDLVEILNKQQKQVFWGIFDIFSMVVSIIVSYILFYGLINPAPVDYIIYTSLAFLFYQLMIGFWGLNASISRYSKITDFMKIFFGVTASSVLSYSICYAFLPLFSIRFIILFILLSTFLILLPRITWQLIYSRRKKGSGDGEHRRTFLIGAGDGGALFMDSYQHPTSELELVGILDKDSKKKGQKLGGIPVLGSYDNLPELAKRHQIERVIVAIPSLDPSEYERILQMCNKLGVKCYKMPKVETVVQGLHQAGTGFQKIDITDLLGRQEIRLDESRLGAELTGKTILVTGAGGSIGSEICRQVSRFNPERIVLLGHGENSIYLVYHELIRKFQGIDYVPVIADIQDYDRLLQVFEQYKPAIVYHAAAHKHVPMMERNPKEAFKNNIRGTYNVAKAVDEAKVSKMVMISTDKAVNPPNVMGATKRVAELIVTGFNQRSQSTYCAVRFGNVLGSRGSVIPVFERQIAEGGPVTVTDFRMTRYFMTIPEASRLVIHAGAYAKDGEVFILDMGKPVKIYDLAKKMVLLSGHTESEIPIVEVGIRPGEKLYEELLVSTELVDNQVMDKIFVGKVNVMPLESINQKIREFRTLSGDELKQAIIAFANQTTHIE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDP_A_3(2GN4)
PSEB_HELPY
[Raw transfer]



NAP_B_16(2GNA)
PSEB_HELPY
[Raw transfer]



NDP_B_5(2GN4)
PSEB_HELPY
[Raw transfer]



UDZ_B_20(3W1V)
?
[Raw transfer]



NAP_A_7(2GN9)
PSEB_HELPY
[Raw transfer]



GDU_A_7(2GNA)
PSEB_HELPY
[Raw transfer]



UDZ_A_11(3W1V)
?
[Raw transfer]



UDZ_A_11(3W1V)
?
[Raw transfer]



UD1_B_6(2GN4)
PSEB_HELPY
[Raw transfer]



UD1_A_4(2GN4)
PSEB_HELPY
[Raw transfer]



UPG_A_10(2GN9)
PSEB_HELPY
[Raw transfer]



UD1_A_4(2GN4)
PSEB_HELPY
[Raw transfer]



GDU_B_10(2GNA)
PSEB_HELPY
[Raw transfer]



UPG_B_16(2GN9)
PSEB_HELPY
[Raw transfer]



UD1_A_10(2GN6)
PSEB_HELPY
[Raw transfer]



UD1_A_4(2GN4)
PSEB_HELPY
[Raw transfer]



UD1_B_16(2GN6)
PSEB_HELPY
[Raw transfer]



UDP_B_16(2GN8)
PSEB_HELPY
[Raw transfer]



UDP_A_10(2GN8)
PSEB_HELPY
[Raw transfer]



UD7_A_3(4G5H)
?
[Raw transfer]
6 PsiBlast_PDB 84.5433% 0 - C- -4J2O - PYRRH_PYRAP -
9 PsiBlast_PDB 84.4934% 0 - C- -3VVC - ? -
41 HHSearch 80.1733% -79 - C1 -4G5H 4.9 ?
40 HHSearch 78.8633% -80 - C1 -3W1V 6.6 ?
60 Fugue 77.0831% -13 - C1 -2GN4 8.0 PSEB_HELPY
3 PsiBlast_PDB 76.1436% -27 - C1 -2GN8 4.5 PSEB_HELPY
1 PsiBlast_PDB 75.8436% -21 - C1 -2GN4 11.5 PSEB_HELPY
21 PsiBlast_CBE 75.5836% -24 - C1 -2GNA 10.6 PSEB_HELPY
53 HHSearch 75.5535% -35 * C1 *2GN4 6.8 PSEB_HELPY
4 PsiBlast_PDB 74.8836% -27 - C1 -2GN9 11.0 PSEB_HELPY
23 PsiBlast_CBE 74.0336% -29 - C1 -2GN8 3.6 PSEB_HELPY
25 PsiBlast_CBE 73.6736% -25 - C1 -2GN4 11.4 PSEB_HELPY
24 PsiBlast_CBE 73.1236% -24 - C1 -2GN6 6.1 PSEB_HELPY
22 PsiBlast_CBE 72.1936% -27 - C1 -2GN9 5.3 PSEB_HELPY
5 PsiBlast_PDB 72.0236% -28 - C1 -2GNA 5.3 PSEB_HELPY
2 PsiBlast_PDB 71.7736% -23 - C1 -2GN6 5.9 PSEB_HELPY
8 PsiBlast_PDB 68.1434% -13 - C1 -4G5H - ? -
26 PsiBlast_CBE 67.7234% -20 - C1 -3W1V 6.8 ?
37 HHSearch 66.6325% 21 - C1 -3PVZ - ? -
7 PsiBlast_PDB 66.3234% -15 - C1 -3W1V 7.2 ?