@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0131: (2017-12-15 )
MKDRYILAFETSCDETSVAVLKNDDELLSNVIASQIESHKRFGGVVPEVASRHHVEVITACIEEALAEAGITEEDVTAVAVTYGPGLVGALLVGLSAAKAFAWAHGLPLIPVNHMAGHLMAAQSVEPLEFPLLALLVSGGHTELVYVSEAGDYKIVGETRDDAVGEAYDKVGRVMGLTYPAGREIDELAHQGQDIYDFPRAMIKEDNLEFSFSGLKSAFINLHHNAEQKGESLSTEDLCASFQAAVMDILMAKTKKALEKYPVKTLVVAGGVAANKGLRERLATEITDVNVIIPPLRLCGDNAGMIAYASVSEWNKENFANLDLNAKPSLAFDTME

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AGS_E_16(3ZEU)
TSAD_SALTY
[Raw transfer]




ATP_A_6(4WQ4)
TSAD_ECOLI
[Raw transfer]




AGS_B_10(3ZEU)
TSAD_SALTY
[Raw transfer]




AGS_E_16(3ZEU)
TSAD_SALTY
[Raw transfer]




ATP_A_7(4WQ5)
TSAD_ECOLI
[Raw transfer]




ATP_B_14(4WQ5)
TSAD_ECOLI
[Raw transfer]




ADP_B_12(4YDU)
TSAD_ECOLI
[Raw transfer]




ATP_B_9(4WQ4)
TSAD_ECOLI
[Raw transfer]




ADP_A_5(4YDU)
TSAD_ECOLI
[Raw transfer]




ANP_B_4(2VWB)
KAE1B_METJA
[Raw transfer]




ANP_A_3(2VWB)
KAE1B_METJA
[Raw transfer]




AMP_B_4(3ZET)
?
[Raw transfer]




AMP_B_6(3WUH)
QRI7_YEAST
[Raw transfer]




45 HHSearch 83.9744% -43 - C2 -3ZEU 6.8 TSAD_SALTY
3 PsiBlast_PDB 81.3044% -38 - C2 -4YDU 6.6 TSAD_ECOLI
4 PsiBlast_PDB 81.2843% -41 - C2 -4WQ4 5.4 TSAD_ECOLI
22 PsiBlast_CBE 80.9644% -41 - C2 -4YDU 6.3 TSAD_ECOLI
2 PsiBlast_PDB 80.7144% -39 - C2 -3ZEU 7.5 TSAD_SALTY
21 PsiBlast_CBE 80.6344% -41 - C2 -3ZEU 6.9 TSAD_SALTY
5 PsiBlast_PDB 80.5243% -40 - C2 -4WQ5 6.7 TSAD_ECOLI
1 PsiBlast_PDB 80.1044% -44 - C2 -3ZET 5.9 ?
24 PsiBlast_CBE 79.3943% -40 - C2 -4WQ5 7.0 TSAD_ECOLI
23 PsiBlast_CBE 79.3343% -43 - C2 -4WQ4 6.0 TSAD_ECOLI
47 HHSearch 78.2630%-119 - C2 -2VWB - KAE1B_METJA -
33 Fugue 77.3531%-110 - C2 -2IVN - KAE1_PYRAB -
7 PsiBlast_PDB 76.4132%-115 - C2 -2IVN - KAE1_PYRAB -
9 PsiBlast_PDB 76.0932%-114 - C2 -2IVP - KAE1_PYRAB -
44 HHSearch 75.7329%-116 - C2 -3ENO - KAE1B_THEAC -
8 PsiBlast_PDB 74.7932%-119 - C2 -2IVO - KAE1_PYRAB -
50 HHSearch 74.6431% -83 - C2 -2IVN - KAE1_PYRAB -
51 HHSearch 74.4831% -85 * C2 *2IVO - KAE1_PYRAB -
46 HHSearch 69.9030% 0 - C- -3EN9 - KAE1B_METJA -
12 PsiBlast_PDB 68.5333% -44 - C2 -2VWB 6.0 KAE1B_METJA