@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr0873: (2017-12-31 )
MGKIIGITGGIASGKSTVTNFLRQQGFQAVDADAVVHQLQKPGGRLFEALVQHFGQEIILENGELNRPLLASLIFSNPEEQKWSNQIQGEIIREELATLREQLAQTEEIFFMDIPLLFEQDYSDWFAETWLVYVDRDAQVERLMKRDQLSKDEAESRLAAQWPLEKKKDLASQVLDNNGNQNQLLNQVHILLEGGRQDDRD

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_2(4TTQ)
COAE_LEGPH
[Raw transfer]




BA3_B_7(1VHT)
COAE_ECOLI
[Raw transfer]




ATP_A_4(1JJV)
COAE_HAEIN
[Raw transfer]




BA3_A_6(1VHT)
COAE_ECOLI
[Raw transfer]




BA3_A_6(1VHT)
COAE_ECOLI
[Raw transfer]




BA3_C_8(1VHT)
COAE_ECOLI
[Raw transfer]




ADP_A_6(1VHL)
COAE_ECOLI
[Raw transfer]




UNL_A_3(2F6R)

[Raw transfer]




BU2_A_2(4TTR)
COAE_LEGPH
[Raw transfer]




BU2_A_2(4TTR)
COAE_LEGPH
[Raw transfer]




POP_A_3(2QOR)
?
[Raw transfer]




77 HHSearch 91.0334%-128 - C2 -1VHT 9.2 COAE_ECOLI
75 HHSearch 88.4331%-134 - C2 -4TTR 2.3 COAE_LEGPH
76 HHSearch 88.3334%-115 - C2 -1T3H - COAE_ECOLI -
4 PsiBlast_PDB 87.1834%-126 - C2 -1VHL 7.6 COAE_ECOLI
5 PsiBlast_PDB 86.2334%-127 - C2 -1VHT 9.2 COAE_ECOLI
6 PsiBlast_PDB 86.1934%-123 - C2 -1VIY - COAE_ECOLI -
24 PsiBlast_CBE 85.4034%-122 - C2 -1VHT 9.7 COAE_ECOLI
74 HHSearch 83.3335% -93 - C2 -1UF9 - COAE_THET8 -
70 HHSearch 83.2630%-129 - C2 -2IF2 - COAE_AQUAE -
7 PsiBlast_PDB 83.0833%-115 - C2 -1T3H - COAE_ECOLI -
9 PsiBlast_PDB 81.8330%-131 - C2 -2IF2 - COAE_AQUAE -
2 PsiBlast_PDB 79.4733% -80 - C2 -4TTQ 6.4 COAE_LEGPH
79 HHSearch 79.3128% -68 - C2 -4I1U - ? -
3 PsiBlast_PDB 79.2333% -78 - C2 -4TTR 2.3 COAE_LEGPH
23 PsiBlast_CBE 78.7534%-119 - C2 -1VHT 8.6 COAE_ECOLI
91 Fugue 77.5227%-121 - C2 -1JJV 7.8 COAE_HAEIN
78 HHSearch 77.2028% -72 - C2 -4I1V - ? -
28 PsiBlast_CBE 76.6232% -60 - C2 -4I1U - ? -
10 PsiBlast_PDB 76.3032% -65 * C2 *4I1U - ? -
1 PsiBlast_PDB 76.0633% -75 - C- -4TTP - COAE_LEGPH -
12 PsiBlast_PDB 75.4331%-108 - C2 -2F6R 3.4