@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1092: (2018-01-04 )
MNGIINLKKEAGMTSHDAVFKLRKILGTKKIGHGGTLDPDVVGVLPIAVGKATRMVEFMQDEGKIYEGEIILGYSTTTEDASGEVVAETPVLSSLDEKLVDEAIASLTGPITQIPPMYSAVKVNGRKLYEYARAGQEVERPERQVIIYQFERTSPISYDGQLARFTFRVKCSKGTYIRTLSVDLGEKLGYAAHMSHLTRTSAAGLQLEDALALEEIAEKVEAGQLDFLHPLEIGTGDLVKVFLTPEEATEVRFGRFIELDQTDKELAAFEDDKLLAILEKRGNLYKPRKVFS

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

URA_A_2(1KSK)
RSUA_ECOLI
[Raw transfer]



BU1_A_4(1VIO)
RSUA_HAEIN
[Raw transfer]



NACID_E_5(3LWO)
TRUB_PYRFU
[Raw transfer]
-
NACID_F_6(3HAY)
TRUB_PYRFU
[Raw transfer]
-
NACID_F_5(3HAX)
TRUB_PYRFU
[Raw transfer]
-
NACID_C_1(1ZE2)
TRUB_THEMA
[Raw transfer]
-
NACID_E_5(3LWR)
TRUB_PYRFU
[Raw transfer]
-
NACID_E_5(3LWV)
TRUB_PYRFU
[Raw transfer]
-
NACID_E_5(3HJY)
TRUB_PYRFU
[Raw transfer]
-
NACID_E_5(3HJW)
TRUB_PYRFU
[Raw transfer]
-
37 HHSearch 92.3338% -93 - C3 -1R3E - TRUB_THEMA -
36 HHSearch 87.7835% -61 - C3 -1K8W - TRUB_ECOLI -
5 PsiBlast_PDB 86.6637% -74 - C3 -1R3E - TRUB_THEMA -
7 PsiBlast_PDB 86.2137% -72 - C3 -1ZE2 12.9 TRUB_THEMA
38 HHSearch 85.9838% -90 - C3 -1ZE1 - TRUB_THEMA -
8 PsiBlast_PDB 84.0736% -77 - C3 -2AB4 - TRUB_THEMA -
2 PsiBlast_PDB 83.3938% -91 - C3 -1K8W - TRUB_ECOLI -
27 Fugue 83.3238% 0 - C3 -1R3E - TRUB_THEMA -
6 PsiBlast_PDB 83.2337% -72 - C3 -1ZE1 - TRUB_THEMA -
4 PsiBlast_PDB 82.1138% -89 - C3 -1ZL3 - TRUB_ECOLI -
1 PsiBlast_PDB 79.0938%-107 - C3 -1R3F - TRUB_ECOLI -
39 HHSearch 76.4432% -83 - C3 -2APO - TRUB_METJA -
3 PsiBlast_PDB 75.7440%-117 - C3 -1SGV - TRUB_MYCTU -
43 HHSearch 74.7032% -96 * C3 *2AUS - TRUB_PYRAB -
35 HHSearch 74.3836% -34 - C3 -1SGV - TRUB_MYCTU -
25 Fugue 73.9835% 39 - C3 -1K8W - TRUB_ECOLI -
40 HHSearch 73.6233% -77 - C3 -2RFK - TRUB_PYRFU -
17 PsiBlast_PDB 71.5130% -80 - C3 -3LWP - TRUB_PYRFU -
13 PsiBlast_PDB 71.0130% -78 - C3 -2HVY - TRUB_PYRFU -
9 PsiBlast_PDB 70.3931% -98 - C3 -2APO - TRUB_METJA -
19 PsiBlast_PDB 70.2530% -75 - C3 -3LWR 3.8 TRUB_PYRFU
20 PsiBlast_PDB 70.1430% -75 - C3 -3LWV 3.3 TRUB_PYRFU
16 PsiBlast_PDB 69.4630% -77 - C3 -3LWO 5.7 TRUB_PYRFU
11 PsiBlast_PDB 69.1930% -72 - C3 -3HJW 10.4 TRUB_PYRFU
12 PsiBlast_PDB 68.8530% -75 - C3 -3HJY 3.4 TRUB_PYRFU
15 PsiBlast_PDB 68.8230% -69 - C3 -3HAY 6.7 TRUB_PYRFU
14 PsiBlast_PDB 68.6630% -70 - C3 -3HAX 10.3 TRUB_PYRFU