@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1243: (2018-01-08 )
MKKIYSFLAGIAAIILVLWGIATHLDSKINSRDSQKLVIYNWGDYIDPELLTQFTEETGIQVQYEAFDSNEAMYTKIKQGGTTYDIAIPSEYMINKMKDEDLLVPLDYSKIEGIENIGPEFLNQSFDPGNKFSIPYFWGTLGIVYNETMVDEAPEHWDDLWKLEYKNSIMLFDGAREVLGLGLNSLGYSLNSKDPQQLEETVDKLYKLTPNIKAIVADEMKGYMIQNNVAIGVTFSGEASQMLEKNENLRYVVPTEASNLWFDNMVIPKTVKNQDSAYAFINFMLKPENALQNAEYVGYSTPNLPAKELLPEETKEDKAFYPDVETMKHLEVYEKFDHKWTGKYSDLFLQFKMYRK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

EPE_A_8(4EQB)
?
[Raw transfer]



EPE_B_15(4EQB)
?
[Raw transfer]



SPD_A_3(3TTN)
SPUE_PSEAE
[Raw transfer]



EPE_A_8(4EQB)
?
[Raw transfer]



PUT_B_4(3TTM)
SPUD_PSEAE
[Raw transfer]



SPD_B_4(3TTN)
SPUE_PSEAE
[Raw transfer]



PUT_A_3(3TTM)
SPUD_PSEAE
[Raw transfer]



PGE_A_2(4GL0)
?
[Raw transfer]



PGE_A_2(4GL0)
?
[Raw transfer]
48 HHSearch 95.80100% -87 - C1 -4EQB 3.1 ?
21 PsiBlast_CBE 95.7799% -86 - C1 -4EQB 3.1 ?
1 PsiBlast_PDB 95.5999% -87 - C1 -4EQB 3.1 ?
49 HHSearch 73.3459% -28 - C1 -4GL0 3.6 ?
2 PsiBlast_PDB 72.5357% -26 - C1 -4GL0 3.6 ?
4 PsiBlast_PDB 67.0534% -10 - C1 -3TTL - SPUE_PSEAE -
53 HHSearch 66.8833% -0 - C1 -3TTL - SPUE_PSEAE -
5 PsiBlast_PDB 64.1933% -5 - C1 -3TTN 3.8 SPUE_PSEAE
8 PsiBlast_PDB 63.7731% 1 - C1 -4JDF - POTF_ECOLI -
54 HHSearch 63.5030% 19 - C1 -3TTK - SPUD_PSEAE -
6 PsiBlast_PDB 63.1531% 15 - C1 -3TTK - SPUD_PSEAE -
58 HHSearch 63.1330% 19 - C1 -3TTM - SPUD_PSEAE -
22 PsiBlast_CBE 63.1031% 16 - C1 -3TTM 2.3 SPUD_PSEAE
25 PsiBlast_CBE 62.8431% 0 - C1 -1A99 - POTF_ECOLI -
9 PsiBlast_PDB 62.8131% 3 - C1 -1A99 - POTF_ECOLI -
56 HHSearch 62.6731% 6 * C1 *4JDF - POTF_ECOLI -
57 HHSearch 62.5431% 3 - C1 -1A99 - POTF_ECOLI -
23 PsiBlast_CBE 62.4331% -1 - C1 -1A99 - POTF_ECOLI -
24 PsiBlast_CBE 62.3131% 2 - C1 -1A99 - POTF_ECOLI -
7 PsiBlast_PDB 61.9731% 18 - C1 -3TTM 2.4 SPUD_PSEAE