@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1413: (2018-01-11 )
MRLTQMPSEFQKALPVLEKIKEAGFEAYFVGGSVRDALLHSPIHDVDIATSSYPEETKQIFPRTADIGIEHGTVLVLDGDEEYEVTTFRTEDVYVDYRRPSAVSFVRSLEEDLKRRDFTVNAFALDETGEIVDLFHGLEDLEKQVLRAVGVASERFNEDALRIMRGFRFQASLGFALEPETFKAMKTLTPLLEKISVERTFVEFDKLLLAPFWRRGLASMIESQAYDYLPDMASSQDKLNRLFDLETDFTFESSEQAWAALLWALEIENAQSFLKSWKTSRQFAKQVQDLLIILALRENGELSKRDCYRFDIDLLLQAENLRQAQGKEVNPQAITEKYQSLTIHDKKEIQINGGILIKEYGYQPGPDLGEILTEIEFAIVDGELENNREAIHAYLREKK

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ATP_A_7(1MIW)
CCA_GEOSE
[Raw transfer]



ATP_A_7(1MIW)
CCA_GEOSE
[Raw transfer]



CTP_B_8(1MIY)
CCA_GEOSE
[Raw transfer]



CTP_A_7(1MIY)
CCA_GEOSE
[Raw transfer]



ATP_B_5(4WC0)
?
[Raw transfer]



APC_F_6(1VFG)
?
[Raw transfer]



APC_E_5(1VFG)
?
[Raw transfer]



ATP_A_3(4WC0)
?
[Raw transfer]



CTP_A_3(4WC5)
?
[Raw transfer]



CTP_A_3(4WC7)
?
[Raw transfer]



CTP_A_3(4WC1)
?
[Raw transfer]



ATP_A_3(3AQN)
?
[Raw transfer]



ATP_A_3(4WC4)
?
[Raw transfer]



CTP_B_4(4WC1)
?
[Raw transfer]



ATP_A_3(4WC6)
?
[Raw transfer]



APC_A_3(4WC2)
?
[Raw transfer]



ATP_B_5(3AQN)
?
[Raw transfer]



GOL_A_4(3AQL)
?
[Raw transfer]



GOL_B_5(3AQL)
?
[Raw transfer]
1 PsiBlast_PDB 90.6843% -71 - C4 -1MIY 3.9 CCA_GEOSE
2 PsiBlast_PDB 90.4243% -74 - C4 -1MIV - CCA_GEOSE -
21 PsiBlast_CBE 90.3143% -69 - C4 -1MIY 4.5 CCA_GEOSE
3 PsiBlast_PDB 89.5043% -73 - C4 -1MIW 5.6 CCA_GEOSE
40 HHSearch 87.6443% -54 * C4 *1MIV - CCA_GEOSE -
39 HHSearch 86.1843% -51 - C4 -1MIW 5.6 CCA_GEOSE
49 HHSearch 63.7028% -59 - C4 -3AQL - ? -
48 HHSearch 63.2128% -47 - C4 -3AQK - ? -
33 Fugue 60.9623% 59 - C4 -4X4W - TRNT1_HUMAN -
32 Fugue 56.9523% 37 - C4 -3AQL - ? -
43 HHSearch 55.7422% 17 - C4 -5HC9 - ? -
47 HHSearch 55.5923% 32 - C4 -3WFO - ? -
41 HHSearch 55.5922% 29 - C4 -4X4W - TRNT1_HUMAN -
44 HHSearch 55.5625% 19 - C4 -4WBY - ? -
7 PsiBlast_PDB 54.1634% -67 - C4 -3AQK - ? -
51 HHSearch 53.4523% 30 - C4 -3WFP - ? -
45 HHSearch 52.8825% - - C4 -4X0A - ? -
23 PsiBlast_CBE 52.1234% -16 - C4 -3AQN 4.0 ?
24 PsiBlast_CBE 51.9834% -14 - C4 -3AQL 3.2 ?
5 PsiBlast_PDB 51.5834% -18 - C4 -3AQL 1.9 ?
6 PsiBlast_PDB 50.6134% -14 - C4 -3AQN 3.9 ?
19 PsiBlast_PDB 45.6238% 9 - C4 -4WC6 4.7 ?
27 PsiBlast_CBE 45.1638% 10 - C4 -4WC0 4.8 ?
18 PsiBlast_PDB 45.0838% 13 - C4 -4WC5 4.8 ?
17 PsiBlast_PDB 45.0638% 11 - C4 -4WC4 4.5 ?
20 PsiBlast_PDB 44.8538% 12 - C4 -4WC7 3.8 ?
14 PsiBlast_PDB 44.5238% 10 - C4 -4WC1 3.6 ?
13 PsiBlast_PDB 44.2638% 11 - C4 -4WC0 4.6 ?
15 PsiBlast_PDB 44.0638% 18 - C4 -4WC2 4.6 ?
26 PsiBlast_CBE 43.8938% 13 - C4 -4WC1 2.8 ?
11 PsiBlast_PDB 42.5238% 9 - C4 -1VFG 4.8 ?
28 PsiBlast_CBE 42.4438% 12 - C4 -1VFG 4.8 ?