@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1583: (2018-01-15 )
MADRGLLIVFSGPSGVGKGTVRREIFESSENQFQYSVSMTTRAQRPGEVDGVDYFFRTREEFEELIRQGQMLEYAEYVGNYYGTPLTYVNETLDKGIDVFLEIEVQGALQVKKKVPDAVFIFLTPPDLDELQDRLVGRGTDSAEVIAQRIEKAKEEIALMREYDYAIVNDQVSLAAERVKCVIEAEHFCVDRVIGHYQEMLPKSPTTR

Atome Classification :

(32 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

0O2_B_8(4QRH)
?
[Raw transfer]




G5P_G_7(2F3R)
KGUA_ECOLI
[Raw transfer]




G5P_J_10(2F3R)
KGUA_ECOLI
[Raw transfer]




0O2_C_12(4QRH)
?
[Raw transfer]




0O2_C_12(4QRH)
?
[Raw transfer]




0O2_B_8(4QRH)
?
[Raw transfer]




GDP_S_19(2AN9)
KGUA_ECOLI
[Raw transfer]




5GP_D_15(2J41)
KGUA_STAAC
[Raw transfer]




0O2_D_18(4QRH)
?
[Raw transfer]




5GP_B_8(2J41)
KGUA_STAAC
[Raw transfer]




GDP_M_13(2AN9)
KGUA_ECOLI
[Raw transfer]




5GP_C_11(2J41)
KGUA_STAAC
[Raw transfer]




5GP_D_4(1GKY)
KGUA_YEAST
[Raw transfer]




5GP_M_13(2ANB)
KGUA_ECOLI
[Raw transfer]




5GP_D_4(1EX7)
KGUA_YEAST
[Raw transfer]




5GP_D_4(1GKY)
KGUA_YEAST
[Raw transfer]




5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]




5GP_A_4(3TR0)
KGUA_COXBU
[Raw transfer]




FMT_B_2(1Z8F)
KGUA_MYCTU
[Raw transfer]




FMT_A_3(1S4Q)
KGUA_MYCTU
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




ADP_C_3(1LVG)
KGUA_MOUSE
[Raw transfer]




LGP_G_7(2F3T)
KGUA_ECOLI
[Raw transfer]




EPE_G_7(1Z6G)
?
[Raw transfer]




POP_A_3(2QOR)
?
[Raw transfer]




46 HHSearch 92.0862%-104 - C4 -3TAU - KGUA_LISMO -
3 PsiBlast_PDB 91.3160%-104 - C4 -3TAU - KGUA_LISMO -
1 PsiBlast_PDB 88.1561%-113 - C4 -4QRH - ? -
21 PsiBlast_CBE 86.4861%-103 - C4 -4QRH 10.4 ?
47 HHSearch 85.0561%-100 - C4 -4QRH 10.4 ?
22 PsiBlast_CBE 84.5661%-102 - C4 -4QRH 10.5 ?
24 PsiBlast_CBE 84.5061%-111 - C4 -2J41 7.3 KGUA_STAAC
48 HHSearch 83.8361%-101 - C4 -4QRH 10.5 ?
23 PsiBlast_CBE 83.3761%-103 - C4 -4QRH 10.5 ?
25 PsiBlast_CBE 82.8161%-111 - C4 -2J41 7.5 KGUA_STAAC
2 PsiBlast_PDB 82.6461%-119 - C4 -2J41 - KGUA_STAAC -
26 PsiBlast_CBE 80.2261%-113 - C4 -2J41 7.2 KGUA_STAAC
16 PsiBlast_PDB 75.8837%-104 - C4 -3TR0 6.6 KGUA_COXBU
13 PsiBlast_PDB 73.2544% -25 - C4 -1ZNY - KGUA_MYCTU -
27 PsiBlast_CBE 73.0443% -35 - C4 -2F3T 2.8 KGUA_ECOLI
62 HHSearch 72.8842% -21 - C4 -1ZNY - KGUA_MYCTU -
12 PsiBlast_PDB 72.7544% -27 - C4 -1ZNX - KGUA_MYCTU -
9 PsiBlast_PDB 72.6543% -31 - C4 -1S96 - KGUA_ECOLI -
10 PsiBlast_PDB 72.1844% -21 - C4 -1S4Q 3.5 KGUA_MYCTU
56 HHSearch 72.1035% -80 - C4 -3TR0 6.6 KGUA_COXBU
4 PsiBlast_PDB 71.4343% -36 - C4 -2AN9 6.3 KGUA_ECOLI
28 PsiBlast_CBE 71.1643% -38 - C4 -2F3T 4.0 KGUA_ECOLI
18 PsiBlast_PDB 70.9539% -35 - C4 -1EX7 5.7 KGUA_YEAST
15 PsiBlast_PDB 70.8543% -22 - C4 -1Z8F 3.4 KGUA_MYCTU
19 PsiBlast_PDB 70.6639% -33 - C4 -1GKY 7.4 KGUA_YEAST
31 PsiBlast_CBE 70.5943% -28 - C4 -2AN9 6.7 KGUA_ECOLI
29 PsiBlast_CBE 70.3043% -41 - C4 -2F3T 3.5 KGUA_ECOLI
8 PsiBlast_PDB 69.9443% -40 - C4 -2F3T 3.4 KGUA_ECOLI
5 PsiBlast_PDB 69.4343% -26 - C4 -2ANB 5.9 KGUA_ECOLI
61 HHSearch 69.2937% -36 * C4 *1GKY 7.4 KGUA_YEAST
7 PsiBlast_PDB 69.2243% -36 - C4 -2F3R 9.7 KGUA_ECOLI
54 HHSearch 61.3932% -42 - C4 -2QOR 2.3 ?