@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : spr1656: (2018-01-16 )
MQNKQEQWTVLKRLMSYLKPYGLLTFLALSFLLATTVIKSVIPLVASHFIDQYLSNLNQLAVTVLLVYYGLYILQTVVQYVGNLLFARVSYSIVRDIRRDAFANMEKLGMSYFDKTPAGSIVSRLTNDTETISDMFSGILSSFISAVFIFLTTLYTMLVLDFRLTALVLLFLPLIFLLVNLYRKKSVKIIEKTRSLLSDINSKLAENIEGIRIIQAFNQEKRLQAEFDEINQEHLAYANRSVALDALFLRPAMSLLKLLGYAVLMTYFGYRGLSIGITAGTMYAFIQYINRLFDPLIEVTQNFSTLQTSMVSAGRVFALIDERTYEPLQENGQAKVKEGNIRFEHVCFSYDGKHPILDDISFSVNKGETIAFVGHTGSGKSSIINVLMRFYEFQSGRVLLDDVDIRDFSQEELRKNIGLVLQEPFLYHGTIKSNIAMYQEISDEQVQAAAAFVDADSFIQELPQGYDSPVSERGSSFSTGQRQLLAFARTVASQPKILILDEATANIDSETESLVQASLAKMRQGRTTIAIAHRLSTIQDANCIYVLDKGRIIESGTHEELLTLGGTYHKMYSLQAGAMAYTL

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

ANP_B_7(2ONJ)
Y1866_STAAM
[Raw transfer]



ATP_H_8(2FGK)

[Raw transfer]



ATP_E_5(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_F_6(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_G_7(2FGK)
HLYBP_ECOLX
[Raw transfer]



ATP_A_9(1XEF)
HLYBP_ECOLX
[Raw transfer]



ACP_A_4(4AYT)
ABCBA_HUMAN
[Raw transfer]



ADP_A_5(2HYD)
Y1866_STAAM
[Raw transfer]



ATP_H_8(2FGJ)

[Raw transfer]



128_A_2(2PMK)

[Raw transfer]



ATP_G_7(2FGJ)
HLYBP_ECOLX
[Raw transfer]



12D_A_2(3B5J)

[Raw transfer]



ACP_A_4(4AYX)
ABCBA_HUMAN
[Raw transfer]



ATP_A_7(1MV5)
LMRA_LACLA
[Raw transfer]



ANP_B_5(3B5Y)
MSBA_SALTY
[Raw transfer]



LMT_B_4(4MKI)
ECFA2_CALS4
[Raw transfer]



ADP_A_5(3B5Z)
MSBA_SALTY
[Raw transfer]



LMT_A_7(4MKI)
ECFA2_CALS4
[Raw transfer]
100 HHSearch 84.5436% -60 - C2 -5MKK - ? -
8 PsiBlast_PDB 84.0035% -59 - C2 -5MKK - ? -
7 PsiBlast_PDB 78.2134% -33 - C2 -4A82 - Y1866_STAAM -
6 PsiBlast_PDB 77.9234% -33 - C2 -2ONJ - Y1866_STAAM -
5 PsiBlast_PDB 77.8634% -33 - C2 -2HYD 4.5 Y1866_STAAM
94 HHSearch 77.7835% -36 - C2 -4A82 - Y1866_STAAM -
93 HHSearch 76.2927% -82 - C2 -5MKK - ? -
21 PsiBlast_CBE 76.0734% -32 - C2 -2ONJ 6.0 Y1866_STAAM
1 PsiBlast_PDB 75.4732% -35 - C2 -3QF4 - Y288_THEMA -
22 PsiBlast_CBE 75.2834% -31 - C2 -2HYD - Y1866_STAAM -
97 HHSearch 75.0932% -37 - C2 -3QF4 - Y288_THEMA -
4 PsiBlast_PDB 74.7832% -37 - C2 -4Q4J - Y288_THEMA -
2 PsiBlast_PDB 73.8732% -33 - C2 -4Q4A - Y288_THEMA -
3 PsiBlast_PDB 73.4032% - - C2 -4Q4H - Y288_THEMA -
96 HHSearch 71.8332% - - C2 -4Q4H - Y288_THEMA -
11 PsiBlast_PDB 71.2828% - - C2 -3B5Z 2.3 MSBA_SALTY
10 PsiBlast_PDB 71.2728% - - C2 -3B5Y 2.1 MSBA_SALTY
13 PsiBlast_PDB 71.1628% - - C2 -3B5W - MSBA_ECOLI -
12 PsiBlast_PDB 70.0028% -18 - C2 -3B60 - MSBA_SALTY -
75 Fugue 69.4227% -28 - C2 -3B60 - MSBA_SALTY -
54 PsiBlast_CBE 43.4641% -12 - C2 -2FGJ 7.0 HLYBP_ECOLX
51 PsiBlast_CBE 43.2041% -14 - C2 -2FGK 6.9 HLYBP_ECOLX
49 PsiBlast_CBE 42.6741% -10 - C2 -2FGK 6.0 HLYBP_ECOLX
48 PsiBlast_CBE 42.4041% -14 - C2 -2FGK 6.9
61 PsiBlast_CBE 42.3441% -13 - C2 -1XEF 6.6 HLYBP_ECOLX
50 PsiBlast_CBE 40.6141% -12 - C2 -2FGK 6.6 HLYBP_ECOLX
53 PsiBlast_CBE 40.2441% -6 - C2 -2FGJ 6.5
43 PsiBlast_CBE 37.3844% -26 - C2 -1MV5 4.9 LMRA_LACLA
73 PsiBlast_CBE 24.6231% 24 - C2 -4MKI 2.5 ECFA2_CALS4
74 PsiBlast_CBE 24.1031% 27 - C2 -4MKI 2.4 ECFA2_CALS4