@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VL04: (2017-10-30 )
MDALELKNIISDGLLSFPVTDFDQNGDFNKSSYAKRLEWLAPYGASALFAAGGTGEFFSLTGNEYSEVIKTAVDICKGSVPIIAGAGGPTRQAIEQAKEAERLGAHGILLMPHYLTEASQEGLIEHVKQVCNSVDFGVIFYNRSVSRLNLDSIQKLTEMCPNLIGFKDSSGQIDMMTAVTQTIGDRLSYLGGLPTAEVFAAPYKALGCPVYSSAVFNFIPKTAMEFYNALRSDDFETTNRLIKDFFLPLIKIRDRKSGYAVSMIKAGAKIVGHDAGPVRPPLSDLTQADYEDLAALIATLGPQ

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMT_C_8(4UR8)
KDGD_AGRFC
[Raw transfer]




GOL_B_10(3PUL)
?
[Raw transfer]




OOG_A_5(4UR8)
KDGD_AGRFC
[Raw transfer]




OOG_B_6(4UR8)
KDGD_AGRFC
[Raw transfer]




OOG_D_9(4UR8)
KDGD_AGRFC
[Raw transfer]




FMT_D_10(4UR8)
KDGD_AGRFC
[Raw transfer]




OOG_C_7(4UR8)
KDGD_AGRFC
[Raw transfer]




GOL_B_8(3PUD)
?
[Raw transfer]




PYR_B_9(3TAK)
?
[Raw transfer]




2KT_B_4(3TDF)
?
[Raw transfer]




2KT_A_3(3TDF)
?
[Raw transfer]




PYR_A_5(3TAK)
?
[Raw transfer]




OXM_B_6(3UQN)
?
[Raw transfer]




OXM_A_4(3UQN)
?
[Raw transfer]




3OH_A_3(3S8H)
DAPA_PSEAE
[Raw transfer]




1 PsiBlast_PDB 96.2250%-134 - C7 -4UR8 2.1 KDGD_AGRFC
102 Fugue 95.6350%-131 - C7 -5HWN - KDGD_AGRFC -
3 PsiBlast_PDB 95.5550%-133 - C7 -5HWM - KDGD_AGRFC -
23 PsiBlast_CBE 95.3050%-130 - C7 -5HWN - KDGD_AGRFC -
25 PsiBlast_CBE 95.1950%-133 - C7 -5HWM - KDGD_AGRFC -
2 PsiBlast_PDB 94.9150%-133 - C7 -5HWJ - KDGD_AGRFC -
32 PsiBlast_CBE 94.8450%-131 - C7 -4UR8 3.0 KDGD_AGRFC
31 PsiBlast_CBE 94.8250%-133 - C7 -4UR8 3.2 KDGD_AGRFC
4 PsiBlast_PDB 94.6250%-133 - C7 -5HWN - KDGD_AGRFC -
26 PsiBlast_CBE 94.4650%-132 - C7 -5HWM - KDGD_AGRFC -
21 PsiBlast_CBE 94.4350%-130 - C7 -5HWN - KDGD_AGRFC -
29 PsiBlast_CBE 94.3550%-132 - C7 -5HWJ - KDGD_AGRFC -
27 PsiBlast_CBE 94.1050%-130 - C7 -5HWJ - KDGD_AGRFC -
28 PsiBlast_CBE 93.7650%-131 - C7 -5HWJ - KDGD_AGRFC -
22 PsiBlast_CBE 93.6550%-131 - C7 -5HWN - KDGD_AGRFC -
30 PsiBlast_CBE 93.1950%-132 - C7 -4UR8 3.0 KDGD_AGRFC
24 PsiBlast_CBE 93.1750%-132 - C7 -5HWM - KDGD_AGRFC -
92 HHSearch 92.9149%-109 - C7 -5HWN - KDGD_AGRFC -
93 HHSearch 91.5649%-107 - C7 -5HWN - KDGD_AGRFC -
89 HHSearch 73.2226% -56 - C7 -3QZE - DAPA_PSEAE -
68 PsiBlast_CBE 49.2132% -43 - C7 -3S8H 2.3 DAPA_PSEAE