@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VND5: (2017-11-13 )
MNKQQILVDIKDDSMSSNETTTGFKPKKSVALSGQVAGNTALCTVGRSGNDLHYRGYDILDLAAGSEFEEVAHLLVHGKLPNKAELKAYKAKLKALRGLPAALKTALEQLPTSAHPMDVMRTGVSVLGCLTPEHEDHNEAGAKDIADKLMASLGSMLLYWYHFSNNGRRIEVETDDDSIAAHFLHLLHGEKPCEEWIQAMHTSLILYAEHEFNASTFTSRVVAGTGSDMYSAITGGIGALRGPKHGGANEVAFVIQQRYDNPDEAEADIRKRIENKEVVIGFGHPVYTVSDPRNEVIKKVAHDLAEAQENTKMYLIAERLEAVMKEVKNMFPNLDWFSAVSYHLMGVPTAMFTPLFVIARTAGWSAHVIEQRQDGKIIRPSANYTGPENLEFKPLAERG

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

AMX_E_5(1CSH)
?
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_E_5(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_F_6(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_E_5(1A59)
PRPC_ABDS2
[Raw transfer]




CIT_F_6(1AJ8)
CISY_PYRFU
[Raw transfer]




CIT_E_5(1A59)
PRPC_ABDS2
[Raw transfer]




GOL_D_4(1VGM)
?
[Raw transfer]




GOL_A_4(1IOM)
?
[Raw transfer]




GOL_A_4(1IOM)
?
[Raw transfer]




GOL_D_4(1VGM)
?
[Raw transfer]




COA_C_3(1A59)
PRPC_ABDS2
[Raw transfer]




84 HHSearch 83.6375%-102 - C7 -3O8J - PRPC_SALTY -
1 PsiBlast_PDB 83.4573%-101 - C7 -3O8J - PRPC_SALTY -
26 PsiBlast_CBE 82.9273%-101 - C7 -3O8J - PRPC_SALTY -
23 PsiBlast_CBE 82.9273%-100 - C7 -3O8J - PRPC_SALTY -
25 PsiBlast_CBE 82.6773%-102 - C7 -3O8J - PRPC_SALTY -
27 PsiBlast_CBE 82.4173%-104 - C7 -3O8J - PRPC_SALTY -
22 PsiBlast_CBE 82.1773% -98 - C7 -3O8J - PRPC_SALTY -
24 PsiBlast_CBE 81.8873%-101 - C7 -3O8J - PRPC_SALTY -
21 PsiBlast_CBE 81.4073% -98 - C7 -3O8J - PRPC_SALTY -
79 HHSearch 69.9935% -84 - C7 -1IOM 3.1 ?
80 HHSearch 69.8738%-102 * C7 *3HWK - PRPC_MYCTU -
35 PsiBlast_CBE 69.8038%-100 - C7 -3HWK - PRPC_MYCTU -
37 PsiBlast_CBE 69.7138%-100 - C7 -3HWK - PRPC_MYCTU -
5 PsiBlast_PDB 69.6936% -83 - C7 -1IOM 3.1 ?
75 HHSearch 69.5040% -41 - C7 -1A59 3.8 PRPC_ABDS2
8 PsiBlast_PDB 69.5038% -94 - C7 -3HWK - PRPC_MYCTU -
36 PsiBlast_CBE 69.4538% -99 - C7 -3HWK - PRPC_MYCTU -
31 PsiBlast_CBE 69.1038% -96 - C7 -3HWK - PRPC_MYCTU -
33 PsiBlast_CBE 69.0938% -98 - C7 -3HWK - PRPC_MYCTU -
32 PsiBlast_CBE 68.9038% -99 - C7 -3HWK - PRPC_MYCTU -
77 HHSearch 67.9938% -47 - C7 -1AJ8 3.4 CISY_PYRFU
76 HHSearch 67.6838% -43 - C7 -1AJ8 3.0 CISY_PYRFU
3 PsiBlast_PDB 67.1241% -36 - C7 -1A59 5.5 PRPC_ABDS2
95 HHSearch 65.8435% -63 - C7 -1VGM 2.3 ?
9 PsiBlast_PDB 65.0338% -23 - C7 -1AJ8 3.0 CISY_PYRFU
38 PsiBlast_CBE 64.9138% -26 - C7 -1AJ8 3.4 CISY_PYRFU
10 PsiBlast_PDB 62.9735% -69 - C7 -1VGM 2.3 ?