@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VPN5: (2017-11-22 )
MNMVKGLKNKVALVTGAAQGIGRRIALRLAQEGAHIALVDMKQDRLNDVQQEIQALGVNASTFIADVSDREQVYAAINHAEQTLGGFDVMINNAGIAQVQAIADITPDEFQKIVDINIGGVLWGIQAAAAKFKQREHKGKIINACSIADHDGFALLGIYSATKFAVRALTQAAAKEYASHGITVNGYCPGIVGTDMWVEIDKRFAEITSAAIGETYKKYVEGIALGRAQTPDDVAALVAFLASEDSDYITGQSILTDGGIVYR

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAI_K_11(1NFQ)
HSD_MYCTU
[Raw transfer]




NAI_G_7(1NFQ)
HSD_MYCTU
[Raw transfer]




NAD_E_5(1NFF)
HSD_MYCTU
[Raw transfer]




NAD_B_4(3WYE)
BUDC_CORGT
[Raw transfer]




EDO_D_14(4WEO)
?
[Raw transfer]




PEG_A_6(3OSU)
FABG_STAAM
[Raw transfer]




3 PsiBlast_PDB 88.9754%-105 - C1 -3WYE - BUDC_CORGT (first) -
28 PsiBlast_CBE 83.1554%-111 - C1 -3WYE 11.4 BUDC_CORGT (first)
133 HHSearch 81.9662% - - C1 -3WTC - ? -
1 PsiBlast_PDB 81.4864% - - C1 -3WTC - ? -
27 PsiBlast_CBE 80.5153% 0 - C- -1GEG - BUDC_KLEPN -
26 PsiBlast_CBE 80.5153% 0 - C- -1GEG - BUDC_KLEPN -
25 PsiBlast_CBE 80.5153% 0 - C- -1GEG - BUDC_KLEPN -
24 PsiBlast_CBE 80.5153% 0 - C- -1GEG - BUDC_KLEPN -
23 PsiBlast_CBE 80.5153% 0 - C- -1GEG - BUDC_KLEPN -
22 PsiBlast_CBE 80.5153% 0 - C- -1GEG - BUDC_KLEPN -
21 PsiBlast_CBE 80.5153% 0 - C- -1GEG - BUDC_KLEPN -
2 PsiBlast_PDB 80.5153% 0 - C- -1GEG - BUDC_KLEPN -
13 PsiBlast_PDB 80.2137%-108 - C1 -3WDS - ? -
43 PsiBlast_CBE 79.5037%-104 - C1 -3AK4 - ? -
12 PsiBlast_PDB 79.5037%-108 - C1 -3AK4 - ? -
44 PsiBlast_CBE 79.1837%-108 - C1 -3AK4 - ? -
41 PsiBlast_CBE 77.8937%-106 - C1 -3WDS - ? -
35 PsiBlast_CBE 77.7850% -13 - C1 -3A28 - BUDC_CORGT -
30 PsiBlast_CBE 77.6950% -11 - C1 -3A28 - BUDC_CORGT -
40 PsiBlast_CBE 77.6737%-103 - C1 -3WDS - ? -
14 PsiBlast_PDB 62.2838% -39 - C1 -3OSU 2.4 FABG_STAAM