@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VQR1: (2017-11-28 )
MTPQQIELVKSTVPVLREHGVTLTTYFYKRMLNNNPELKNVFNLDDQTSLRQPRALAAAVLAYAENIENPTVLAKAVERITTKHVSLDIQPDQYAIVGDNLLHSISEVLNVPFESELIEAWKQAYLQLADILIGVEKQKYEQLESLKGGWAGWRSFEITQIDPLESGKRFTLKATDHGDVLTSPANAFISVKVQVPNQQLEQPKAFKFTEAQEDNTYLFDVQPEENHTEFSVSNILLEHYRVGDQVQVSAPLTL

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

HEM_B_9(3OZW)
HMP_CUPNH
[Raw transfer]




DGG_B_9(1CQX)
HMP_CUPNH
[Raw transfer]




DGG_B_9(1CQX)
HMP_CUPNH
[Raw transfer]




DGG_A_9(3OZV)
HMP_CUPNH
[Raw transfer]




DGG_A_9(3OZV)
HMP_CUPNH
[Raw transfer]




IMD_B_6(3VHB)
BAHG_VITST
[Raw transfer]




KKK_B_10(3OZW)
HMP_CUPNH
[Raw transfer]




EDO_A_11(3TM9)
BAHG_VITST
[Raw transfer]




2 PsiBlast_PDB 84.4241% -74 - C3 -3OZU - HMP_CUPNH -
22 PsiBlast_CBE 84.2041% -74 - C3 -3OZW 10.1 HMP_CUPNH
23 PsiBlast_CBE 83.7641% -73 - C3 -3OZV 5.5 HMP_CUPNH
1 PsiBlast_PDB 83.5741% -73 - C3 -1CQX - HMP_CUPNH -
4 PsiBlast_PDB 82.9441% -70 - C3 -3OZW - HMP_CUPNH -
21 PsiBlast_CBE 82.8841% -76 - C3 -1CQX 7.2 HMP_CUPNH
42 HHSearch 82.6242% -61 - C3 -1CQX 7.2 HMP_CUPNH
3 PsiBlast_PDB 82.5341% -69 - C3 -3OZV - HMP_CUPNH -
44 HHSearch 81.8441% -51 - C3 -3OZV 5.5 HMP_CUPNH
45 HHSearch 76.9038% -56 - C3 -4G1B - ? -
26 PsiBlast_CBE 75.9338% -51 - C3 -4G1B - ? -
25 PsiBlast_CBE 75.8138% -57 - C3 -4G1B - ? -
24 PsiBlast_CBE 75.6138% -50 - C3 -4G1B - ? -
46 HHSearch 75.0438% -47 - C3 -4G1V - ? -
7 PsiBlast_PDB 74.7038% -45 - C3 -4G1V - ? -
6 PsiBlast_PDB 74.0738% -51 - C3 -4G1B - ? -
43 HHSearch 73.9637% -30 - C3 -1GVH - HMP_ECOLI -
5 PsiBlast_PDB 73.9138% -44 - C3 -1GVH - HMP_ECOLI -
32 Fugue 70.6736% 23 - C3 -1GVH - HMP_ECOLI -
13 PsiBlast_PDB 70.4244%-184 - C3 -3TLD - BAHG_VITST -
28 PsiBlast_CBE 65.8045%-189 - C3 -3VHB 4.0 BAHG_VITST