@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VS69: (2017-12-06 )
MASYALLEQARHLQALVLDVDGILSDGFVTLTNTGDEIKSFDIRDGLGMKLAQQAGMKVIIITGRKSNIVEKRMSDLGVDLVFQGREDKGSALREACAQFNILPSDCLYMGDDWPDLSAFAIAGMSVTVPNGHEEVRRRADLVTQAMGGRGAVREVCDMLLIAKGIYQELLEKYLAVPH

Atome Classification :

(30 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

SLB_A_16(3E81)
?
[Raw transfer]




SLB_D_23(3E81)
?
[Raw transfer]




KDO_B_11(4UMF)
?
[Raw transfer]




SLB_C_11(3E81)
?
[Raw transfer]




VN4_B_9(4HGO)
?
[Raw transfer]




VN4_D_13(4HGO)
?
[Raw transfer]




VN4_B_17(3E81)
?
[Raw transfer]




KDN_D_14(4HGO)
?
[Raw transfer]




KDO_A_2(4UME)
?
[Raw transfer]




KDO_B_12(4UMF)
?
[Raw transfer]




KDN_A_7(4HGO)
?
[Raw transfer]




VN4_C_11(4HGO)
?
[Raw transfer]




KDO_A_7(4UMF)
?
[Raw transfer]




CIT_A_2(4UMD)
?
[Raw transfer]




KDO_D_14(3I6B)
KDSC_ECOL6
[Raw transfer]




KDO_C_16(4UMF)
?
[Raw transfer]




KDO_B_9(3I6B)
KDSC_ECOL6
[Raw transfer]




2 PsiBlast_PDB 92.2040%-101 - C2 -4UM7 - ? -
25 PsiBlast_CBE 91.8540%-101 - C2 -4UM7 - ? -
14 PsiBlast_PDB 91.6240%-116 - C2 -3N1U - ? -
171 HHSearch 91.4440%-115 - C2 -3N1U - ? -
24 PsiBlast_CBE 90.9140%-101 - C2 -4UM7 - ? -
26 PsiBlast_CBE 90.1840%-103 - C2 -4UM7 - ? -
23 PsiBlast_CBE 89.9440% -96 - C2 -4UMF 2.2 ?
22 PsiBlast_CBE 89.6140% -99 - C2 -4UMF 2.7 ?
9 PsiBlast_PDB 89.1042%-121 - C2 -2R8Y - KDSC_ECOL6 -
1 PsiBlast_PDB 88.9340% -97 - C2 -4UM5 - ? -
175 HHSearch 88.8943%-127 * C2 *3N07 - ? -
5 PsiBlast_PDB 88.8640%-105 - C2 -4UMF 2.1 ?
3 PsiBlast_PDB 88.8140%-106 - C2 -4UMD 2.7 ?
178 HHSearch 88.7142%-124 - C2 -2R8X - KDSC_ECOL6 -
10 PsiBlast_PDB 88.6642%-122 - C2 -2R8Z - KDSC_ECOL6 -
4 PsiBlast_PDB 88.5540%-100 - C2 -4UME 3.4 ?
81 PsiBlast_CBE 88.3943%-132 - C2 -3I6B - KDSC_ECOL6 -
176 HHSearch 88.3143%-124 - C2 -3N07 - ? -
12 PsiBlast_PDB 88.2743%-123 - C2 -3I6B 2.7 KDSC_ECOL6
184 HHSearch 88.0738%-131 - C2 -3IJ5 - KDSC_YERPE -
80 PsiBlast_CBE 88.0043%-124 - C2 -3I6B 2.8 KDSC_ECOL6
21 PsiBlast_CBE 87.5440% -99 - C2 -4UMF 3.4 ?
120 PsiBlast_CBE 78.2834% -77 - C2 -4HGO 3.0 ?
130 PsiBlast_CBE 78.2534% -77 - C2 -3E81 3.2 ?
118 PsiBlast_CBE 77.9734% -81 - C2 -4HGO 2.8 ?
119 PsiBlast_CBE 77.5334% -76 - C2 -4HGO 3.0 ?
132 PsiBlast_CBE 77.3234% -81 - C2 -3E81 3.9 ?
129 PsiBlast_CBE 77.2634% -76 - C2 -3E81 2.6 ?
117 PsiBlast_CBE 76.4234% -76 - C2 -4HGO 2.8 ?
131 PsiBlast_CBE 75.6134% -80 - C2 -3E81 2.9 ?