@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VTM2: (2017-12-14 )
MAQAKKSVDIKNIRNFSIIAHIDHGKSTLADRFIQMCGGLQDREMQAQVLDSMELERERGITIKAASVTLYYTHPNGQEYQLNFIDTPGHVDFSYEVSRSLAACEGALLVVDAAQGVEAQSVANCYTAIEQGLEVLPILNKIDLPQAEPERVIHEIEEIIGIEATNAPTCSAKTGLGVEGVLETLVDVIPAPTGDREAPLQALIIDSWFDNYLGVVSLVRIKDGRIRKGDKMLVKSTGQTHIVTSVGVFNPKHTETGVLEAGEVGFVIAGIKDIFGAPVGDTITLSTTPEVASLPGFKKVKPQVYAGLFPIDASDFEPFREALQKLQINDSALFFEPESSDALGFGFRCGFLGMLHMEIVQERLEREYDLDLISSAPTVVYEAVTKKGDTIYIDSPSKMPDGSVVEDLREPIAECHILVPQEYLGNVMILCIERRGVQKDMKFLGNQVSITFEIPMAEVVMDFFDKLKSCSRGFASLDYNFIRFESSSLVKVDVLINGEKVDALAMICHRNDARHRGIALVDKMKDLIPRQMFDVAIQAAIGAQIIARSTVKAMRKNVLAKCYGGDVSRKKKLLAKQKEGKKRMKQVGSVEIPQEAFLAVLKVER

Atome Classification :

(27 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GDP_D_4(2P8Y)
EF2_YEAST
[Raw transfer]



GDP_A_5(1U2R)
EF2_YEAST
[Raw transfer]



GDP_A_5(4ZCL)
TYPA_ECOLI
[Raw transfer]



G4P_A_5(4ZCM)
TYPA_ECOLI
[Raw transfer]



GDP_A_3(2E1R)
EF2_YEAST
[Raw transfer]



GDP_A_3(4MYT)
EFG_THETH
[Raw transfer]



GCP_A_2(2J7K)
EFG_THETH
[Raw transfer]



GNP_E_5(2P8Z)
EF2_YEAST
[Raw transfer]



GNP_D_4(2P8X)
EF2_YEAST
[Raw transfer]



GNP_C_3(2P8W)
EF2_YEAST
[Raw transfer]



GCP_A_2(5A9W)
TYPA_ECOLI
[Raw transfer]



GDP_A_2(5A9X)
TYPA_ECOLI
[Raw transfer]
93 Fugue 97.5370%-121 - C1 -3CB4 - LEPA_ECOLI -
64 HHSearch 95.5172%-102 - C1 -3DEG - LEPA_ECOLI -
1 PsiBlast_PDB 94.5071%-102 * C1 *3DEG - LEPA_ECOLI -
67 HHSearch 63.3830% -7 - C1 -2BM0 - ? -
71 HHSearch 62.3527% -24 - C1 -2XEX - EFG_STAAU -
72 HHSearch 60.4129% - - C1 -1ZN0 - EFG_THET8 -
100 Fugue 54.5126% -4 - C1 -4M1K - ? -
65 HHSearch 54.3729% -15 - C1 -4ZCI - TYPA_ECOLI -
68 HHSearch 53.8127% 8 - C1 -3J0E - EFG_ECOLI -
4 PsiBlast_PDB 53.1828% -32 - C1 -4ZCL 5.1 TYPA_ECOLI
3 PsiBlast_PDB 53.0828% -30 - C1 -4ZCI - TYPA_ECOLI -
91 HHSearch 51.9832% -60 - C1 -5VH6 - EFG_BACSU -
82 HHSearch 51.5024% -35 - C1 -5ANB - EFL1_HUMAN -
2 PsiBlast_PDB 51.1628% -30 - C1 -4ZCM 5.2 TYPA_ECOLI
74 HHSearch 50.2824% 4 - C1 -5MQF - U5S1_HUMAN -
78 HHSearch 50.1022% -4 - C1 -3JB9 - SN114_SCHPO -
79 HHSearch 49.1322% -4 - C1 -5LJ3 - SN114_YEAST -
70 HHSearch 49.0524% 3 - C1 -2DY1 - ? -
85 HHSearch 48.8725% 11 - C1 -3VQT - RF3_DESVM -
97 Fugue 48.6424% -10 - C1 -1ELO - ? -
9 PsiBlast_PDB 35.2036%-101 - C1 -4MYT 4.9 EFG_THETH
38 PsiBlast_CBE 29.3738% -44 - C1 -2P8W 3.3 EF2_YEAST
32 PsiBlast_CBE 29.2738% -44 - C1 -2P8X 2.4 EF2_YEAST
36 PsiBlast_CBE 29.2038% -44 - C1 -1U2R 5.0 EF2_YEAST
30 PsiBlast_CBE 29.2038% -44 - C1 -2P8Z 3.3 EF2_YEAST
31 PsiBlast_CBE 29.1738% -44 - C1 -2P8Y 4.9 EF2_YEAST
41 PsiBlast_CBE 27.9438% -24 - C1 -2E1R 4.6 EF2_YEAST