@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : B0VUQ1: (2017-12-19 )
MSKPYLIAPSILSADFARLGEDVDKVLAAGADVVHFDVMDNHYVPNLTFGAGVCKALKNYGITAPVDVHLMVSPVDRIIGDFLEAGADIITFHPEASHHIDRSLQLIKSGGAKAGLVFNPATPLHYLDHVLDKVDQILLMSVNPGFGGQKFIPMTLEKLREARKIIDASGRDIRLEVDGGVGPANIREIAEAGADMFVAGSAIFGQPDYKVMIDQMRAELAKVGSVDA

Atome Classification :

(24 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

5SP_A_4(3OVR)
RPE_HUMAN
[Raw transfer]




5RP_B_10(3OVQ)
RPE_HUMAN
[Raw transfer]




5RP_A_4(3OVQ)
RPE_HUMAN
[Raw transfer]




5SP_B_10(3OVR)
RPE_HUMAN
[Raw transfer]




GOL_A_6(3QC3)
RPE_HUMAN
[Raw transfer]




GOL_A_6(3QC3)
RPE_HUMAN
[Raw transfer]




75 HHSearch 96.2768%-136 - C4 -5UMF - ? -
1 PsiBlast_PDB 95.3567%-134 - C4 -5UMF - ? -
76 HHSearch 95.0368%-136 - C4 -5UMF - ? -
22 PsiBlast_CBE 94.7067%-134 - C4 -5UMF - ? -
21 PsiBlast_CBE 93.5167%-134 - C4 -5UMF - ? -
72 HHSearch 90.1564%-157 - C4 -3INP - ? -
2 PsiBlast_PDB 88.5165%-159 - C4 -3INP - ? -
3 PsiBlast_PDB 77.4050% -66 - C4 -1TQJ - RPE_SYNY3 -
86 HHSearch 76.2948% -58 - C4 -1RPX - RPE_SOLTU -
81 HHSearch 74.6148% -58 - C4 -1TQJ - RPE_SYNY3 -
4 PsiBlast_PDB 74.0249% -59 - C4 -1RPX - RPE_SOLTU -
73 HHSearch 73.1841% -70 - C4 -1H1Y - RPE1_ORYSJ -
74 HHSearch 72.4141% -70 - C4 -1H1Z - RPE1_ORYSJ -
83 HHSearch 70.7539% -59 - C4 -3QC3 2.4 RPE_HUMAN
57 Fugue 69.9847% 2 - C4 -1RPX - RPE_SOLTU -
77 HHSearch 69.8540% -59 * C4 *3OVP - RPE_HUMAN -
69 HHSearch 69.6935% -74 - C4 -3CT7 - ALSE_ECOLI -
8 PsiBlast_PDB 69.0640% -57 - C4 -3OVQ 4.1 RPE_HUMAN
79 HHSearch 68.9045% 0 - C- -2FLI - ? -
78 HHSearch 68.9045% 0 - C- -2FLI - ? -
40 PsiBlast_CBE 68.3740% -55 - C4 -3OVQ 3.7 RPE_HUMAN
9 PsiBlast_PDB 68.3740% -54 - C4 -3OVR 4.4 RPE_HUMAN
14 PsiBlast_PDB 68.0539% -62 - C4 -3QC3 2.4 RPE_HUMAN
39 PsiBlast_CBE 67.9340% -53 - C4 -3OVR 4.2 RPE_HUMAN