@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U173: (2017-12-19 )
MNPLLIVGTRQWKGVHSVMAYKYLVIVESPAKAKTIEKYLGRNYKVMASVGHIRDLPKSKMGIDFENNYEPHYISIRGKGDVIKSLKAAAKKAQKVYLASDPDREGEAIAWHLAYLLGLDLKEKNRVVFNEITKDAVKAAFKEPRTIDVDLVDAQQARRTLDRIVGYSISPILWRKVKKGLSAGRVQSVALKIIIDREKEIREFVPEEYWSIDGNFKKARKKFKANFWGIDGKKKKLPDAQSVKEVTARIDGTDFEVKKVEKKERKRNPANPFTTSSLQQEAARKLNFRTRKTMMVAQQLYEGITLGKQGTVGLITYMRTDSTRIADTAKAEAAAFIEDTYGKEFSRHDHRKIKNAQGAQDAHEAVRPTSVLRTPDELKQYLDKDQLKLYTLIWSRFVASQMTPAILDTMKVTLEQNGVIFIANGSKIKFKGFMQVYVEGRDDGKEEKENILPELEEGDVVQSVDIEPKQHFTQPPARFSEATLIRALEENGVGRPSTYAPTLDTIQRRYYVKLTQKRFEPTELGEIVNSLICEFFPQIVDIHFTAEMEGDLDKIEEGTEAWVKVVDRFYKPFEKELTNAEEKIEKIQIKDEPAGFDCDVCGHPMVIKLGKYGKFYACSNFPDCRNTKPIVKEIGVTCPVCHEGQVIERKSKKNRLFYGCSRFPECEFTSWDKPVGRNCPKCDGYLVEKKVKGGKQVVCVNGDYEEDIQK

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

T3P_C_3(1CY8)
TOP1_ECOLI
[Raw transfer]



T3P_E_5(1CY6)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY2)
TOP1_ECOLI
[Raw transfer]



TMP_C_3(1CY1)
TOP1_ECOLI
[Raw transfer]



TMP_E_5(1CY4)
TOP1_ECOLI
[Raw transfer]



NACID_C_3(3PX7)
TOP1_ECOLI
[Raw transfer]
-
NACID_Y_1(1MW8)
TOP1_ECOLI
[Raw transfer]
-
NACID_B_2(3PX7)
TOP1_ECOLI
[Raw transfer]
-
3 PsiBlast_PDB 74.5244% -21 - C2 -2GAJ - TOP1_THEMA -
1 PsiBlast_PDB 73.3239% 62 - C2 -4RUL - TOP1_ECOLI -
21 HHSearch 73.1042% -18 - C2 -2GAJ - TOP1_THEMA -
2 PsiBlast_PDB 71.8144% -22 - C- -2GAI - TOP1_THEMA -
43 Fugue 71.6543% -19 - C- -2GAI - TOP1_THEMA -
23 HHSearch 71.0640% 40 - C2 -5D5H - TOP1_MYCTU -
15 PsiBlast_PDB 70.0838% 47 - C2 -5D5H - TOP1_MYCTU -
22 HHSearch 69.9242% -17 - C- -2GAI - TOP1_THEMA -
13 PsiBlast_PDB 68.1141% 49 - C2 -1MW9 - TOP1_ECOLI -
25 HHSearch 68.0744% 61 - C2 -1MW9 - TOP1_ECOLI -
12 PsiBlast_PDB 67.2141% 60 - C2 -1MW8 11.0 TOP1_ECOLI
4 PsiBlast_PDB 66.5742% 47 - C2 -1CY1 3.7 TOP1_ECOLI
11 PsiBlast_PDB 66.3241% 67 - C2 -3PWT - TOP1_ECOLI -
6 PsiBlast_PDB 66.0342% 69 - C2 -1CY6 4.0 TOP1_ECOLI
14 PsiBlast_PDB 66.0141% 64 - C2 -3PX7 14.7 TOP1_ECOLI
9 PsiBlast_PDB 65.9642% 65 - C2 -1CY4 3.3 TOP1_ECOLI
8 PsiBlast_PDB 65.9342% 40 - C2 -1CY0 - TOP1_ECOLI -
7 PsiBlast_PDB 65.7342% 75 - C2 -1CY8 4.0 TOP1_ECOLI
10 PsiBlast_PDB 65.6742% 64 - C2 -1ECL - TOP1_ECOLI -
5 PsiBlast_PDB 65.5442% 65 - C2 -1CY2 4.2 TOP1_ECOLI