@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : I3U5C1: (2017-12-29 )
MGERMELIEKAPAKINLGLDVLYRRQDGYHELEMVMSSVNLADHLFFEEITEDKIIVETNKAFLPVDERNNVYQAALLLKNKYNIKTGVKIFVKKNIPVAAGLGGGSTDCAAALRGINQLWNLGCSLEELAEIGLEVGTDVPYCVYGSTAFVGGKGEEIQVLPSMPQCWVVLVKPRMSVSTRTVFREVDTQAIQHQDIHGLAEAIREQDYQQMIKKMGNSLEDITGKRHPVIHQIKERMIKYGADAALMSGSGPTVFALCQHYSRAQRVYNGLKGFCEEVYLVRTLQ

Atome Classification :

(21 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

CDM_B_8(2V2Z)
ISPE_AQUAE
[Raw transfer]




GVS_B_9(2VF3)
ISPE_AQUAE
[Raw transfer]




GVS_A_3(2VF3)
ISPE_AQUAE
[Raw transfer]




C5P_A_2(4EMD)
?
[Raw transfer]




CDM_A_2(3PYE)
ISPE_MYCTU
[Raw transfer]




GOL_B_15(2V2V)
ISPE_AQUAE
[Raw transfer]




CTN_B_10(2V34)
ISPE_AQUAE
[Raw transfer]




V12_A_11(2V2V)
ISPE_AQUAE
[Raw transfer]




CTN_A_3(2V34)
ISPE_AQUAE
[Raw transfer]




GOL_A_2(3PYD)
ISPE_MYCTU
[Raw transfer]




ATP_A_2(4ED4)
?
[Raw transfer]




ATP_A_3(4DXL)
?
[Raw transfer]




ADP_B_9(2V8P)
ISPE_AQUAE
[Raw transfer]




ADP_B_9(2V2Z)
ISPE_AQUAE
[Raw transfer]




ADP_A_4(2V8P)
ISPE_AQUAE
[Raw transfer]




ANP_A_2(3PYF)
ISPE_MYCTU
[Raw transfer]




POP_A_4(2VF3)
ISPE_AQUAE
[Raw transfer]




POP_B_10(2VF3)
ISPE_AQUAE
[Raw transfer]




ADP_A_2(3PYG)
ISPE_MYCTU
[Raw transfer]




SG3_B_11(2V34)
ISPE_AQUAE
[Raw transfer]




50 Fugue 90.8632%-104 - C1 -1UEK - ISPE_THET8 -
8 PsiBlast_PDB 84.3934%-106 - C1 -1UEK - ISPE_THET8 -
7 PsiBlast_PDB 82.7533% -45 - C1 -3PYG 3.7 ISPE_MYCTU
5 PsiBlast_PDB 82.6533% -46 - C1 -3PYE 4.5 ISPE_MYCTU
4 PsiBlast_PDB 82.2933% -42 - C1 -3PYD 2.0 ISPE_MYCTU
6 PsiBlast_PDB 80.7333% -43 - C1 -3PYF 4.3 ISPE_MYCTU
3 PsiBlast_PDB 80.0833% -28 - C1 -4EMD 6.1 ?
1 PsiBlast_PDB 78.5433% -27 - C1 -4DXL 6.7 ?
2 PsiBlast_PDB 77.3233% -27 - C1 -4ED4 6.5 ?
12 PsiBlast_PDB 74.7833% -75 - C1 -2V34 5.2 ISPE_AQUAE
14 PsiBlast_PDB 74.0733% -73 - C1 -2VF3 4.6 ISPE_AQUAE
10 PsiBlast_PDB 73.9733% -75 - C1 -2V2V 6.9 ISPE_AQUAE
9 PsiBlast_PDB 73.8633% -76 - C1 -2V2Q - ISPE_AQUAE -
22 PsiBlast_CBE 73.4933% -75 - C1 -2V8P 5.8 ISPE_AQUAE
23 PsiBlast_CBE 73.4433% -75 - C1 -2V34 5.1 ISPE_AQUAE
25 PsiBlast_CBE 73.3833% -74 - C1 -2V2V 2.5 ISPE_AQUAE
21 PsiBlast_CBE 73.3733% -75 - C1 -2VF3 5.5 ISPE_AQUAE
26 PsiBlast_CBE 73.3533% -73 - C1 -2V2Q - ISPE_AQUAE -
11 PsiBlast_PDB 72.8633% -76 - C1 -2V2Z - ISPE_AQUAE -
24 PsiBlast_CBE 72.6433% -72 - C1 -2V2Z 8.2 ISPE_AQUAE
13 PsiBlast_PDB 72.3733% -70 - C1 -2V8P 5.3 ISPE_AQUAE