@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3XWV3: (2017-12-31 )
MNYRVAVLGPGSWGTALAQVLAENGHDVRIWGHRASQVEEINTQHTNQRYLPDHCLPDSIQAFTNMEDAVKDADAVLFVIPTKAIRSVAKELVPKLNTKPVIIHASKGLEQGTHKRISDILLEEIPVEKRKAVVVLSGPSHAEEVAKHDITTITAASTDAKAAKYVQELFMNNYFRIYTNPDVIGVEMGAALKNIIAIGAGAIHGLGFGDNAKAAIMTRGLAEISRLGVAMGANPLTFIGLSGVGDLVVTCTSVHSRNWRAGNLLGQGQPLEEVLANMGMVVEGVNTTQAAMELAQIMEIEMPITQTIYEVLYEQKEIKTAAKEIMLRDGKKENEFSLTIF

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NDE_C_3(1N1E)
GPDA_LEIME
[Raw transfer]



NDE_D_4(1N1E)
GPDA_LEIME
[Raw transfer]



NDP_A_3(1Z82)
?
[Raw transfer]



NAD_C_3(1EVZ)
GPDA_LEIME
[Raw transfer]



G3P_B_6(1Z82)
?
[Raw transfer]



G3P_B_6(1Z82)
?
[Raw transfer]
55 HHSearch 79.4937% -87 - C1 -3K96 - GPDA_COXBU -
54 HHSearch 79.4037% -83 - C1 -3K96 - GPDA_COXBU -
56 HHSearch 79.0133% - - C1 -4FGW - GPD1_YEAST -
53 HHSearch 76.0943% -97 - C1 -1Z82 4.7 ?
49 HHSearch 74.8235% -46 - C1 -1N1E - GPDA_LEIME -
50 HHSearch 74.3935% -48 - C1 -1EVY - GPDA_LEIME -
9 PsiBlast_PDB 74.0335% -48 - C1 -1N1G - GPDA_LEIME -
14 PsiBlast_PDB 73.7530% - - C1 -4FGW - GPD1_YEAST -
1 PsiBlast_PDB 73.4637% -33 - C1 -3K96 - GPDA_COXBU -
3 PsiBlast_PDB 73.4535% -50 - C1 -1EVY - GPDA_LEIME -
22 PsiBlast_CBE 73.4435% -48 - C1 -1N1E 12.7 GPDA_LEIME
21 PsiBlast_CBE 73.4237% -36 - C1 -3K96 - GPDA_COXBU -
8 PsiBlast_PDB 72.9235% -48 - C1 -1N1E 12.4 GPDA_LEIME
6 PsiBlast_PDB 72.8935% -48 - C1 -1M66 - GPDA_LEIME -
7 PsiBlast_PDB 72.7935% -53 - C1 -1M67 - GPDA_LEIME -
5 PsiBlast_PDB 72.4135% -48 - C1 -1JDJ - GPDA_LEIME -
4 PsiBlast_PDB 72.3735% -48 - C1 -1EVZ 5.5 GPDA_LEIME
2 PsiBlast_PDB 71.1142% -34 - C1 -1Z82 11.5 ?
41 Fugue 68.7134% 20 * C1 *1EVY - GPDA_LEIME -
23 PsiBlast_CBE 65.8131% -16 - C1 -2PLA - GPD1L_HUMAN -