@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y0R4: (2018-01-22 )
MMNTQAKTFVRSQLFPEEMPQFLEKKKQVGILGGTFNPVHLAHLVMAEQAGRNLGLDRVFLMPSYQPPHVDEKQTIDAKHRLNMLELAVEDNPFLQIETIELARGGKSYTYDTMKELTQNNPDTDYYFIIGGDMVEYLPKWYKIDELTSMVNFVGIRRPGYTTDTPYPVIWVDVPEIDISSTKIRQKIKEGCSIRYLVPDKVIDYIQNEGLYEYGL

Atome Classification :

(36 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

FMT_B_7(3MLB)
NADD_BACAC
[Raw transfer]




FMT_B_10(3MLA)
NADD_BACAC
[Raw transfer]




NXX_C_10(2QTR)
NADD_BACAC
[Raw transfer]




DND_H_8(1KAQ)
NADD_BACSU
[Raw transfer]




DND_L_12(1KAQ)
NADD_BACSU
[Raw transfer]




DND_D_11(3E27)
?
[Raw transfer]




NXX_C_10(2QTR)
NADD_BACAC
[Raw transfer]




DND_C_9(3E27)
?
[Raw transfer]




NXX_B_9(2QTR)
NADD_BACAC
[Raw transfer]




NXX_A_8(2QTR)
NADD_BACAC
[Raw transfer]




DND_B_7(3E27)
?
[Raw transfer]




DND_A_5(3E27)
?
[Raw transfer]




DND_I_9(1KAQ)
NADD_BACSU
[Raw transfer]




DND_J_10(1KAQ)
NADD_BACSU
[Raw transfer]




DND_J_10(1KAQ)
NADD_BACSU
[Raw transfer]




DND_K_11(1KAQ)
NADD_BACSU
[Raw transfer]




NAP_B_5(4S1O)
NADD_MYCTU
[Raw transfer]




GOL_B_8(2QTM)
?
[Raw transfer]




ATP_A_3(5DB4)
?
[Raw transfer]




GOL_A_9(2QTN)
?
[Raw transfer]




GOL_A_9(2QTN)
?
[Raw transfer]




GOL_A_6(2QTM)
?
[Raw transfer]




LJZ_A_5(3MLB)
NADD_BACAC
[Raw transfer]




JJZ_A_3(3MLA)
NADD_BACAC
[Raw transfer]




LJZ_A_5(3MLB)
NADD_BACAC
[Raw transfer]




DND_G_7(1KAQ)
NADD_BACSU
[Raw transfer]




NCN_B_5(2QTN)
?
[Raw transfer]




NCN_D_12(1YUM)
NADD_PSEAE
[Raw transfer]




CIT_E_5(1K4M)
NADD_ECOLI
[Raw transfer]




CIT_E_5(1K4M)
NADD_ECOLI
[Raw transfer]




CIT_I_9(1K4M)
NADD_ECOLI
[Raw transfer]




CIT_G_7(1K4M)
NADD_ECOLI
[Raw transfer]




JJZ_A_3(3MLA)
NADD_BACAC
[Raw transfer]




DZ9_A_3(3HFJ)
?
[Raw transfer]




DZ9_A_3(3HFJ)
?
[Raw transfer]




6 PsiBlast_PDB 95.0448%-177 - C2 -3MLB 6.0 NADD_BACAC
5 PsiBlast_PDB 94.5748%-174 - C2 -3MLA 5.4 NADD_BACAC
3 PsiBlast_PDB 94.1748%-182 - C2 -3DV2 - ? -
38 PsiBlast_CBE 93.8748%-172 - C2 -3HFJ 5.3 ?
9 PsiBlast_PDB 93.7348%-178 - C2 -2QTM 2.7 ?
36 PsiBlast_CBE 93.4548%-176 - C2 -3MLB 5.9 NADD_BACAC
35 PsiBlast_CBE 92.7148%-184 - C2 -3MMX - NADD_BACAC -
4 PsiBlast_PDB 92.6248%-171 - C2 -3HFJ 5.1 ?
8 PsiBlast_PDB 92.4048%-158 - C2 -2QTR 11.1 NADD_BACAC
10 PsiBlast_PDB 92.3348%-165 - C2 -2QTN 2.0 ?
71 HHSearch 92.2648%-162 - C2 -2QTN 2.0 ?
44 PsiBlast_CBE 92.2348%-160 - C2 -2QTN 4.5 ?
40 PsiBlast_CBE 92.1048%-159 - C2 -2QTR 10.8 NADD_BACAC
33 PsiBlast_CBE 92.0448%-181 - C2 -3MMX - NADD_BACAC -
45 PsiBlast_CBE 91.8748%-163 - C2 -2QTM 2.0 ?
42 PsiBlast_CBE 91.8748%-158 - C2 -3E27 11.0 ?
34 PsiBlast_CBE 91.7848%-186 - C2 -3MMX - NADD_BACAC -
30 PsiBlast_CBE 91.7748%-190 - C2 -3MMX - NADD_BACAC -
7 PsiBlast_PDB 91.7648%-183 - C2 -3MMX - NADD_BACAC -
37 PsiBlast_CBE 91.6348%-176 - C2 -3MLA 5.4 NADD_BACAC
43 PsiBlast_CBE 91.3648%-160 - C2 -3E27 11.4 ?
39 PsiBlast_CBE 90.8248%-155 - C2 -2QTR 11.7 NADD_BACAC
70 HHSearch 90.4048%-153 - C2 -2QTR 11.7 NADD_BACAC
41 PsiBlast_CBE 89.6548%-155 - C2 -3E27 11.0 ?
11 PsiBlast_PDB 89.2648%-153 - C2 -3E27 11.4 ?
2 PsiBlast_PDB 89.1947%-140 - C2 -1KAQ 10.1 NADD_BACSU
23 PsiBlast_CBE 88.4547%-144 - C2 -1KAQ 9.5 NADD_BACSU
24 PsiBlast_CBE 88.3747%-141 - C2 -1KAQ 9.3 NADD_BACSU
69 HHSearch 87.8346%-141 - C2 -1KAQ 9.3 NADD_BACSU
25 PsiBlast_CBE 87.1947%-137 - C2 -1KAQ 10.2 NADD_BACSU
22 PsiBlast_CBE 86.7947%-156 - C2 -1KAQ 8.3 NADD_BACSU
21 PsiBlast_CBE 84.2547%-167 - C2 -1KAQ 6.7 NADD_BACSU
73 HHSearch 77.8436% -60 - C2 -1K4M 4.1 NADD_ECOLI
64 PsiBlast_CBE 75.0732% -60 - C2 -1K4M 4.2 NADD_ECOLI
63 PsiBlast_CBE 74.6732% -63 - C2 -1K4M 4.1 NADD_ECOLI
65 PsiBlast_CBE 74.3032% -58 - C2 -1K4M 4.3 NADD_ECOLI