@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
Sort entries by :
Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y0T1: (2018-01-22 )
MKLGFIGTGVMGSAVARHLLEAGHEVAVYNRTKAKADPLVTEGAIWADTPKAVAEQSNILFTMVGYPKDVEEIYYGQSGIFSADISGHILVDLTTSTPSLAEKIAKTAKEKGADALDAPVSGGDLGAKNGTLTIMVGGEEAVYDQVLPLFKEFGTTFTLHGSAGKGQHTKMANQIMIAGTMTGMTEMLVYAQKNGLDLKKVIETLSGGSAANWSLSNYSPRILKEDYTPGFFVKHFIKDLKIALEEAEKMDLVLPATTQALKLYEELADKGFENDGTQALIKLWWPEGKIPEKKS

Atome Classification :

(22 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

NAP_A_2(3WS7)
?
[Raw transfer]



NDP_C_7(2CVZ)
?
[Raw transfer]



NAP_A_2(3W6Z)
?
[Raw transfer]



NDP_K_11(1WP4)
?
[Raw transfer]



NAD_C_9(5JE8)
?
[Raw transfer]



EPE_A_6(3OBB)
SERDH_PSEAE
[Raw transfer]



EPE_A_6(5JE8)
?
[Raw transfer]



7VD_C_11(5U5G)
?
[Raw transfer]



7VD_D_14(5U5G)
?
[Raw transfer]
1 PsiBlast_PDB 84.4141%-126 - C1 -3WS7 12.6 ?
74 HHSearch 84.2234%-101 - C1 -1VPD - ? -
2 PsiBlast_PDB 83.2540%-127 - C1 -3W6Z 12.7 ?
62 HHSearch 82.6634% -98 - C1 -4DLL - ? -
61 HHSearch 82.3034%-104 - C1 -4DLL - ? -
5 PsiBlast_PDB 81.6032%-108 - C1 -3PEF - ? -
56 HHSearch 81.4132%-102 - C1 -3PEF - ? -
6 PsiBlast_PDB 81.3232%-104 - C1 -1VPD - ? -
60 HHSearch 80.9927%-106 * C1 *3PDU - ? -
65 HHSearch 79.8833% -93 - C1 -3OBB - SERDH_PSEAE -
67 HHSearch 79.6027%-113 - C1 -2UYY - GLYR1_HUMAN -
59 HHSearch 79.2927% -98 - C1 -3DOJ - GLYR1_ARATH -
3 PsiBlast_PDB 77.2339%-123 - C1 -1YB4 - ? -
12 PsiBlast_PDB 76.9627% -98 - C1 -3DOJ - GLYR1_ARATH -
58 HHSearch 76.4629% -85 - C1 -2GF2 - 3HIDH_HUMAN -
7 PsiBlast_PDB 76.3634% -63 - C1 -5JE8 2.4 ?
11 PsiBlast_PDB 76.1927%-105 - C1 -3PDU - ? -
9 PsiBlast_PDB 75.8035% -95 - C1 -4DLL - ? -
8 PsiBlast_PDB 75.7834% -92 - C- -3CKY - HMGD_EUBBA -
10 PsiBlast_PDB 75.2629%-118 - C1 -2UYY - GLYR1_HUMAN -
17 PsiBlast_PDB 68.8231%-115 - C1 -3OBB 2.3 SERDH_PSEAE
24 PsiBlast_CBE 68.2533% -88 - C1 -5U5G 2.9 ?