@TOME V2.3
(Mar 2018)

Ref. - - Doc.
Global output mode :
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Sequence Color type :

Show alignment :
Column output:
Score:

Alignment:

3D Common Core:

Structural Clustering:

Modeller Result :

Complexes Modeling
Templates Information:
Sequence & Result Tab:

Values color: [ Good | Correct | Middling | Bad ]Modeled complexes Tab: Displays ligands Score after transfer from template to model
Cell color: RMS between binding site of experimental template and receptor model: [‹ 3Å | ‹ 10Å | › 10Å]
Result: [ Good | Correct | Acceptable | Bad | Empty = ligand not selected during the calculation step or result rejected ]

Query sequence : Q3Y1S2: (2018-01-27 )
MNERIKNKLALLPDQPGCYLMKDKNGTIIYVGKAKILKNRVRSYFTGSHNTKTERLVSEIEDFEYIVTESNIEALLLEINLIKKNDPKYNIMLKDDKTYPFLKITNEKYPRLVITRKVLKDKALYFGPYPDVGAANETKKILDRLFPLRKCKPSQTKEPCLYYHLGQCLCPYYFDVDPKVYTKIVDEVKKFLNGGHEKIESEIHQKMEKAAENMEFEKAAEYRDQIRAIETIMTRQKMTNTDLLDRDVFGYAIDKGWMCVQVFFVRQGKLIERDVSMFPFYNEAEEDFLTYLGQFYQENEHFIPKEVLIPDTIDKPSVEALLATKVLQPKRGEKKKLVELANKNASVALNERFDLIARKQERTIGAVERLGNAMNIPTPIRIESFDNSNIMGTNPVAAMVVFIDGKPARKEYRKYKIKTVNGPDDYASMREVIYRRYSRVIREGLPLPDLILIDGGKGQVDVAKDVLENQLGIDIPIAGMAKNDKHKTNELLFGIDLAVVPLERNSPEFFLLQRIQDEVHRFAITFHRQLRSKNSFASRLDEIEGLGPKRKKMLLKEFKSLKNITAATTEELQEIGLPKNVAQNVFDKLHQE

Atome Classification :

(20 SA) Binding Score for complex ligand / Scwrl (Unconserved SChains Recalculated) model (Only selected ligand are displayed)
(Atome) (Ident) (Tito) (Num) (pKd) (Uniprot)

GOL_A_7(1YD2)
UVRC_THEMA
[Raw transfer]



GOL_A_7(1YD3)
UVRC_THEMA
[Raw transfer]
3 PsiBlast_PDB 77.1541% -10 - C1 -2NRV - UVRC_THEMA -
20 HHSearch 76.8643% 2 - C1 -2NRZ - UVRC_THEMA -
5 PsiBlast_PDB 76.0341% -6 - C1 -2NRX - UVRC_THEMA -
2 PsiBlast_PDB 75.5941% -9 - C1 -2NRT - -
6 PsiBlast_PDB 74.5141% -7 - C1 -2NRZ - UVRC_THEMA -
4 PsiBlast_PDB 72.2441% -11 - C1 -2NRW - UVRC_THEMA -
24 HHSearch 61.9179% -82 - C1 -1YD6 - UVRC_GEOKA -
1 PsiBlast_PDB 61.5178% -99 - C1 -1YD6 - UVRC_GEOKA -
25 HHSearch 59.1279%-102 - C1 -1YD6 - UVRC_GEOKA -
10 PsiBlast_PDB 54.5048%-107 - C1 -1YD3 3.4 UVRC_THEMA
26 HHSearch 54.1348%-106 - C1 -1YD3 - UVRC_THEMA -
11 PsiBlast_PDB 52.2747%-102 - C1 -1YD2 3.3 UVRC_THEMA
43 Fugue 52.1344% - - C1 -2NRR - UVRC_THEMA -
13 PsiBlast_PDB 51.7247%-103 - C1 -1YD5 - UVRC_THEMA -
9 PsiBlast_PDB 51.0448% -95 - C1 -1YD1 - UVRC_THEMA -
27 HHSearch 50.7749% -95 - C1 -1YD0 - UVRC_THEMA -
12 PsiBlast_PDB 50.2047% -96 - C1 -1YD4 - UVRC_THEMA -
8 PsiBlast_PDB 50.1548% -96 - C1 -1YD0 - UVRC_THEMA -
44 Fugue 49.9947% -96 - C1 -1YD0 - UVRC_THEMA -
7 PsiBlast_PDB 49.1848% -94 - C1 -1YCZ - UVRC_THEMA -